To study the prognostic relevance of rare genetic aberrations in acute myeloid leukemia (AML), such as t(16;21), international collaboration is required. Two different types of t(16;21) translocations can be distinguished: t(16;21)(p11;q22), resulting in the fusion gene; and t(16;21)(q24;q22), resulting in RUNX1-core binding factor (). We collected data on clinical and biological characteristics of 54 pediatric AML cases with t(16;21) rearrangements from 14 international collaborative study groups participating in the international Berlin-Frankfurt-Münster (I-BFM) AML study group. The AML-BFM cohort diagnosed between 1997 and 2013 was used as a reference cohort. (n = 23) had significantly lower median white blood cell count (12.5 × 10/L, = .03) compared with the reference cohort. rearranged AML (n = 31) had no predominant French-American-British (FAB) type, whereas 76% of had an M1/M2 FAB type (M1, M2), significantly different from the reference cohort ( = .004). Four-year event-free survival (EFS) of patients with was 7% (standard error [SE] = 5%), significantly lower compared with the reference cohort (51%, SE = 1%, < .001). Four-year EFS of was 77% (SE = 8%, = .06), significantly higher compared with the reference cohort. Cumulative incidence of relapse was 74% (SE = 8%) in , 0% (SE = 0%) in compared with 32% (SE = 1%) in the reference cohort ( < .001). Multivariate analysis identified both and as independent risk factors with hazard ratios of 1.9 ( < .0001) and 0.3 ( = .025), respectively. These results describe 2 clinically relevant distinct subtypes of pediatric AML. Similarly to other core-binding factor AMLs, patients with RUNX1-CBFA2T3 rearranged AML may benefit from stratification in the standard risk treatment, whereas patients with FUS-ERG rearranged AML should be considered high-risk.