40S ribosomes are loaded onto capped mRNAs via the multisubunit translation initiation factors eIF3 and eIF4F. While eIF4E is the eIF4F cap recognition component, the eIF4G subunit associates with 40S-bound eIF3. How this intricate process is coordinated remains poorly understood. Here, we identify an eIF3 subunit that regulates eIF4F modification and show that eIF3e is required for inducible eIF4E phosphorylation. Significantly, recruitment of the eIF4E kinase Mnk1 (MAPK signal-integrating kinase 1) to eIF4F depended on eIF3e, and eIF3e was sufficient to promote Mnk1-binding to eIF4G. This establishes a mechanism by which 40S ribosome loading imparts a phosphorylation mark on the cap-binding eIF4F complex that regulates selective mRNA translation and is synchronized by a specific eIF3 subunit.Supplemental material is available for this article.Received December 18, 2013; revised version accepted March 18, 2014. Recruitment of 40S ribosome subunits to the mRNA 59 terminus in eukaryotes requires a large number of translation initiation factors (eIFs) (Sonenberg and Hinnebusch 2009). Eukaryotic mRNAs have a 59 methyl-7-GTP (m 7 -GTP) cap that is recognized by eIF4F, a multisubunit complex consisting of a cap-binding protein (eIF4E) and an RNA helicase (eIF4A) assembled on a large scaffold protein (eIF4G) (Fig. 1A). eIF4F assembly is regulated by eIF4E-binding proteins (4E-BPs) that competitively inhibit eIF4E from interacting with eIF4G. Phosphorylation of 4E-BPs by the kinase mTOR frees eIF4E, making it available to form an eIF4F complex. Once part of the complex, eIF4E is phosphorylated by the eIF4G-associated kinase MAPK signal integrating kinase 1 (Mnk1) or Mnk2 (Buxade et al. 2008). While Mnk2 accounts for basal eIF4E phosphorylation, Mnk1 mediates inducible phosphorylation in response to upstream p38MAPK or extracellular signal-regulated kinase (ERK) activation (Scheper et al. 2001). Phosphorylation of eIF4E regulates translation of specific mRNAs involved in cellular transformation, immune responses, and viral infection (Furic et al. 2010;Walsh and Mohr 2011;Herdy et al. 2012). eIF4G also binds polyA-binding protein (PABP), which binds the polyA tail at the mRNA 39 end to stimulate translation of fully processed, intact mRNAs (Sonenberg and Hinnebusch 2009). eIF4F recruits ribosomes indirectly through bridging interactions with a 40S ribosome-associated complex, eIF3 ( Fig. 1A; Hinnebusch 2006). Mammalian eIF3 consists of 10-13 subunits (a-m) with a core comprised of five to eight subunits, of which a, b, c, g, and i have yeast homologs (Zhou et al. 2008;Sun et al. 2011;Querol-Audi et al. 2013), although a ''functional core'' of subunits a, b, c, e, f, and h has been suggested (Masutani et al. 2007). As a translation initiation factor, eIF3 stimulates ternary complex (TC) recruitment to the 40S ribosome and prevents premature 60S ribosome joining, both of which require noncore eIF3 subunits (Hinnebusch 2006). However, while eIF3f binds mTOR (Harris et al. 2006) and eIF3j interacts with eIF1A in the ribo...