Abstract:Transcriptional dysregulation is central to many diseases including cancer. Mutation or deregulated expression of proteins involved in transcriptional machinery leads to aberrant gene expression that disturbs intricate cellular processes of division and differentiation. The subunits of the mediator complex are master regulators of stimuli‐derived transcription and are essential for transcription by RNA polymerase II. MED12 is a part of the CDK8 kinase module of the mediator complex and is essential for kinase … Show more
“…The activation helix is essential for the ability of MED12 to activate CDK8 kinase activity, although it is not essential for binding to the CCNC-CDK8 complex. This model, in which precise positioning of the conserved MED12 activation helix is required for activation of CDK8 via its T-loop, could explain the frequent occurrence of variants in cancers, as this would directly influence the ability of MED12 to activate CDK8 [8,13]. Step 1: Cyclin C binds to CDK8 and pushes the αC-helix of CDK8 into the "pushed-in" conformation.…”
Section: Med12 Functional Domainsmentioning
confidence: 99%
“…The domain name is derived from a conserved sequence motif LCEWAV. To date, no functions of the LCEWAV domain have been described, although the presence of a number of pathologic variants in this domain ( Figure 2 ) suggests that it might have some undiscovered function [ 8 ].…”
Section: Med12 Functional Domainsmentioning
confidence: 99%
“…The paralogs are mutually exclusive with each other, but not with other kinase subunits, allowing for eight different kinase modules [ 5 , 6 , 7 ]. The different kinase modules are cell type-specific, as MED12 and MED13 are ubiquitously expressed [ 8 ], whereas MED13L is mostly expressed in brain and heart tissue [ 9 ], and MED12L is mostly expressed in the brain [ 10 ]. CDK8 and CDK19 seem to have similar expression patterns and are also ubiquitously expressed [ 11 , 12 ].…”
Section: Introductionmentioning
confidence: 99%
“…MED12 interacts with DNA-bound transcription factors and hence acts as a hub for the communication of transcription factors with the kinase subunit and core Mediator [ 8 ]. It also regulates the activity of the kinase module via interaction with a conserved T-loop on CDK8 [ 13 ].…”
Section: Introductionmentioning
confidence: 99%
“…It also regulates the activity of the kinase module via interaction with a conserved T-loop on CDK8 [ 13 ]. Due to the important role of MED12 in the regulation of several developmental and signaling pathways, somatic variants in MED12 are known to be involved in cancer and germline variants cause a spectrum of developmental disorders that involve Hardikar syndrome to relatively unspecific non-syndromic intellectual disability (ID) [ 8 , 14 , 15 , 16 ].…”
MED12 is a member of the Mediator complex that is involved in the regulation of transcription. Missense variants in MED12 cause FG syndrome, Lujan-Fryns syndrome, and Ohdo syndrome, as well as non-syndromic intellectual disability (ID) in hemizygous males. Recently, female patients with de novo missense variants and de novo protein truncating variants in MED12 were described, resulting in a clinical spectrum centered around ID and Hardikar syndrome without ID. The missense variants are found throughout MED12, whether they are inherited in hemizygous males or de novo in females. They can result in syndromic or nonsyndromic ID. The de novo nonsense variants resulting in Hardikar syndrome that is characterized by facial clefting, pigmentary retinopathy, biliary anomalies, and intestinal malrotation, are found more N-terminally, whereas the more C-terminally positioned variants are de novo protein truncating variants that cause a severe, syndromic phenotype consisting of ID, facial dysmorphism, short stature, skeletal abnormalities, feeding difficulties, and variable other abnormalities. This broad range of distinct phenotypes calls for a method to distinguish between pathogenic and non-pathogenic variants in MED12. We propose an isogenic iNeuron model to establish the unique gene expression patterns that are associated with the specific MED12 variants. The discovery of these patterns would help in future diagnostics and determine the causality of the MED12 variants.
“…The activation helix is essential for the ability of MED12 to activate CDK8 kinase activity, although it is not essential for binding to the CCNC-CDK8 complex. This model, in which precise positioning of the conserved MED12 activation helix is required for activation of CDK8 via its T-loop, could explain the frequent occurrence of variants in cancers, as this would directly influence the ability of MED12 to activate CDK8 [8,13]. Step 1: Cyclin C binds to CDK8 and pushes the αC-helix of CDK8 into the "pushed-in" conformation.…”
Section: Med12 Functional Domainsmentioning
confidence: 99%
“…The domain name is derived from a conserved sequence motif LCEWAV. To date, no functions of the LCEWAV domain have been described, although the presence of a number of pathologic variants in this domain ( Figure 2 ) suggests that it might have some undiscovered function [ 8 ].…”
Section: Med12 Functional Domainsmentioning
confidence: 99%
“…The paralogs are mutually exclusive with each other, but not with other kinase subunits, allowing for eight different kinase modules [ 5 , 6 , 7 ]. The different kinase modules are cell type-specific, as MED12 and MED13 are ubiquitously expressed [ 8 ], whereas MED13L is mostly expressed in brain and heart tissue [ 9 ], and MED12L is mostly expressed in the brain [ 10 ]. CDK8 and CDK19 seem to have similar expression patterns and are also ubiquitously expressed [ 11 , 12 ].…”
Section: Introductionmentioning
confidence: 99%
“…MED12 interacts with DNA-bound transcription factors and hence acts as a hub for the communication of transcription factors with the kinase subunit and core Mediator [ 8 ]. It also regulates the activity of the kinase module via interaction with a conserved T-loop on CDK8 [ 13 ].…”
Section: Introductionmentioning
confidence: 99%
“…It also regulates the activity of the kinase module via interaction with a conserved T-loop on CDK8 [ 13 ]. Due to the important role of MED12 in the regulation of several developmental and signaling pathways, somatic variants in MED12 are known to be involved in cancer and germline variants cause a spectrum of developmental disorders that involve Hardikar syndrome to relatively unspecific non-syndromic intellectual disability (ID) [ 8 , 14 , 15 , 16 ].…”
MED12 is a member of the Mediator complex that is involved in the regulation of transcription. Missense variants in MED12 cause FG syndrome, Lujan-Fryns syndrome, and Ohdo syndrome, as well as non-syndromic intellectual disability (ID) in hemizygous males. Recently, female patients with de novo missense variants and de novo protein truncating variants in MED12 were described, resulting in a clinical spectrum centered around ID and Hardikar syndrome without ID. The missense variants are found throughout MED12, whether they are inherited in hemizygous males or de novo in females. They can result in syndromic or nonsyndromic ID. The de novo nonsense variants resulting in Hardikar syndrome that is characterized by facial clefting, pigmentary retinopathy, biliary anomalies, and intestinal malrotation, are found more N-terminally, whereas the more C-terminally positioned variants are de novo protein truncating variants that cause a severe, syndromic phenotype consisting of ID, facial dysmorphism, short stature, skeletal abnormalities, feeding difficulties, and variable other abnormalities. This broad range of distinct phenotypes calls for a method to distinguish between pathogenic and non-pathogenic variants in MED12. We propose an isogenic iNeuron model to establish the unique gene expression patterns that are associated with the specific MED12 variants. The discovery of these patterns would help in future diagnostics and determine the causality of the MED12 variants.
Background:Objective Focal cortical dysplasia type 2 (FCD2) is malformations of cortical development that constitutes a common cause of pediatric focal epilepsy. Germline or somatic variants in the mammalian target of rapamycin (mTOR) signaling pathway genes are pathogenesis of FCD2. In this study, whole-exome deep sequencing was performed on dysplastic cortex from focal epilepsy in children to explore genetic characteristic in FCD2.
MethodsResected core lesions of FCD2 were con rmed by pathology and peripheral blood from 11 patients were collected. Deep whole-exome sequencing (> 500X) was performed on derived genomic DNA, germline or somatic variants in brainspeci c genes were analyzed and identi ed.
ResultsIn 11 patients, a heterozygous pathogenic germline variant of DEPDC5 was identi ed in one case, while somatic variants were found in four brain samples. The frequencies of the somatic variant allele were 2.52%~5.12%. Somatic variants in AKT3, TSC2 and MTOR (mTOR signaling pathway genes) were found in three samples. Besides, one somatic variant was detected in MED12 which not been reported to associated with FCD2.
ConclusionOur study expanded the variant spectrum in the mTOR-GATOR pathway, also detected a somatic variant in MED12 which was potentially associated with FCD 2.
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