Impaired chloroplast function is responsible for nearly two-thirds of the inhibition of net photosynthesis caused by dark chilling in tomato (Lycopersicon esculentum Mill.). Yet the plant can eventually recover full photosynthetic capacity if it is rewarmed in darkness at high relative humidity. As a means of identifying potential sites of chilling injury in tomato, we monitored leaf protein synthesis in chilled plants during this rewarming recovery phase, since changes in the synthesis of certain proteins might be indicative of damaged processes in need of repair. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of proteins pulse labeled with I35Slmethionine revealed discrete changes in the pattern of protein synthesis as a result of chilling. A protein of Mr = 27 kilodaltons (kD), abundantly synthesized by unchilled plants, declined to undetectable levels in chilled plants. Reillumination restored the synthesis of this protein in plants rewarmed for 8 hours. Peptide mapping analysis showed the 27 kD protein to be the major chlorophyll a/b binding protein of the photosystem II light-harvesting complex (LHCP-II). The identity of this protein was confirmed by its immunoprecipitation from leaf extracts by a monoclonal antibody specific for the major LHCP-II species. While chilling abolished the synthesis of the major LHCP-II species, it also induced the synthesis of an entirely new protein of M, = 35 kD. The protein was synthesized on cytoplasmic ribosomes, and twodimensional polyacrylamide gel electrophroesis showed it to exist as a single isoelectric species. This chilling-induced 35 kD protein is structurally distinct from the 27 kD LHCP-II and appears to be synthesized specifically in response to low temperature. While the 35 kD protein was found not to be associated with the chloroplast thylakoid membrane, chilling did cause selective changes in thylakoid membrane protein synthesis. The synthesis of two unidentified proteins, Mr = 14 and 41 kD, and the j-subunit of the chloroplast coupling factor were substantially reduced after chilling. These losses may provide clues as to the causes of the overall reduction in net photosynthesis caused by chilling.Plant species evolutionarily adapted to warm habitats are quite susceptible to injury by low, above-freezing temperatures (0 < T <1 2°C). For in darkness (26). While increased stomatal resistance accounts for some of the inhibition, the major portion of the decrease was due to direct impairment of chloroplast activity (26). Yet plants damaged by chilling in darkness can eventually recover full photosynthetic capacity if they are rewarmed in darkness at high RH (24). Presumably, the damaged biochemical processes are repaired under these conditions.Our research is directed toward identifying those elements that account for the susceptibility of chloroplast activity to chilling. Previous work has shown that dark chilling has vanishing little effect on water oxidation capacity (26), electron transfer reactions (20), or the regulation and activation...