The dark green pigmented marine bacterium Pseudoalteromonas tunicata colonizes living surfaces and produces a range of extracellular compounds that inhibit common fouling organisms, including marine invertebrate larvae, algae, bacteria, and fungi. We have observed a positive correlation between the antifouling activity of P. tunicata strain D2 and the expression of pigmentation. To address the hypothesis that pigmentation and antifouling may be jointly regulated in this organism and to begin to identify potential regulatory elements, we used transposon mutagenesis to generate a strain of P. tunicata deficient in antifouling activity. The data presented here describe the phenotypic and molecular characterization of a nonpigmented transposon mutant strain of P. tunicata (D2W2). Analyses of the antifouling capabilities of D2W2 demonstrate that this strain is deficient in the ability to inhibit each of the target fouling organisms. Genetic analysis of D2W2 identified a gene, designated wmpR (white mutant phenotype), with high sequence similarity to transcriptional regulators ToxR from Vibrio cholerae and CadC from Escherichia coli. Two-dimensional polyacrylamide gel electrophoresis analysis revealed that WmpR is essential for the expression of a significant subset of stationary-phase-induced proteins likely to be important for the synthesis of fouling inhibitors. The identification of a gene involved in the regulation of expression of antifouling phenotypes will contribute to the understanding of the interactions between bacteria and other surface-colonizing organisms in the marine environment.An established biofouling community on surfaces in the marine environment consists of a complex mixture of microorganisms in addition to various sessile algae and animals. The formation of a biofouling community generally begins with the colonization of bacteria, followed by the adherence of diatoms and the settlement and attachment of algal spores and invertebrate larvae (2,10,32). Biological interactions between different surface-associated organisms play a major role in the development and maintenance of biofouling communities. Many sessile algae and animals have evolved defense mechanisms against fouling by producing metabolites that can influence the settlement, growth and survival of other organisms (3,5,17,25). However, algae and animals lacking chemical defenses and nonchemical defenses such as surface sloughing are thought to rely on secondary metabolites produced by associated surface bacteria as their defense against fouling (14,18,29).The marine surface-associated bacterium Pseudoalteromonas tunicata strain D2 produces a number of stationary-phase, extracellular inhibitors that affect the normal settlement and growth of a variety of common marine fouling organisms. These include larvae from the invertebrates Ciona intestinalis and Balanus amphitrite, spores from the algae Ulva lactuca and Polysiphonia, various bacteria, and fungi (13). Moreover, the active components appear to be target specific and include a polar...