“…Differences between studies may be partly explained by different experimental procedures employed. These differences include genotype of the cells used, statistical or normalisation approaches and tissue type; such as bronchial and nasal brushings (Ogilvie et al, 2011, Wright et al, 2006, Clarke et al, 2013, isogenic bronchial cells (Virella-Lowell et al, 2000), primary tracheal and bronchial cell cultures (Zabner et al, 2005) and foetal tracheal cells (Verhaeghe et al, 2007). It remains to be determined what direct contribution mutant CFTR makes to an altered CF transcriptome, and it is highly likely that other factors such as infection and inflammation are major contributors to this altered expression of both lncRNAs and protein coding transcripts.…”