Osteosarcoma is one of the most prevalent bone tumors, occurring mostly in adolescence. However, no noticeable progress has been achieved in developing new therapeutic agents for this disease. Matrix metalloproteinase 9 (MMP9), a type IV collagenase, is a known anticancer target and is overexpressed in osteosarcomas. MMPs can degrade components of the extracellular matrix and are known to be involved in tumor invasion and metastasis. In the present study, we designed and synthesized a pyrrole-imidazole polyamide (HN.49), a gene-silencing agent that specifically targets the nuclear factor-kappa B (NF-κB) binding site of the human MMP9 promoter. We then examined the effect of HN.49 on the enzyme activity of MMP9 and the migration activity of osteosarcoma cells in vitro. Key words pyrrole-imidazole polyamide; matrix metalloproteinase 9; osteosarcoma Osteosarcoma is one of the most common primary malignant tumors of bone and occurs mainly in adolescents and young adults.1,2) There have been significant advances in its treatment in the recent years with a limb-salvage surgery and various chemotherapies. The elapse-free survival rates have been improved from less than 20% to 60%. However, these chemotherapies are not fully effective, and as a result, approximately 20% of all osteosarcoma patients still die owing to tumor metastasis.3) Therefore, the research should focus on developing new therapies for osteosarcoma.Matrix metalloproteinase 9 (MMP9), 92-kDa type IV collagenase (gelatinase B, MMP9), contains fibronectin-like domains for collagen-binding and is capable of degrading types I, IV, V, VII and XI collagens and laminin. 4,5) There is increasing evidence that MMP9 expression is elevated in malignant cancers compared with benign or non-invasive tumors and that for the role of MMP9 in tumor invasion in vitro and in vivo.6,7) Metastatic lesions of osteosarcoma in children have been shown to be strongly positive for MMP9 in immunohistochemical analysis.8) Hence, a compound that pre-transcriptionally deregulates MMP9 expression needs to be evaluated as a potentially useful MMP9 silencer for cancer therapy. Studies of the DNA minor groove binder of naturally occurring antitumor/antiviral antibiotics, including duocarmycin A and distamycin A, indicated the development of designable DNA recognition molecules in a sequence-dependent manner, including pyrrole-imidazole polyamide (PI polyamide).9-13) Since PI polyamides are low molecular organic compounds resistant to nucleolytic enzymes, PI polyamide could be transported across cell membrane and subsequently into cell nuclei without any delivery system and may not be influenced by any catabolic enzymes or metabolic enzymes, such as nucleases and p450 enzymes, even in animals. [14][15][16][17] Hence, PI polyamides show great promise as new medicines that might inhibit transcriptional control of target gene. Indeed, we have developed PI polyamides as gene silencers, including the design and synthesis of PI polyamides that target MMP9 effectively. We demonstrated significan...