Mammalian
β-hexosaminidases have been shown to play essential
roles in cellular physiology and health. These enzymes are responsible
for the cleavage of the monosaccharides N-acetylglucosamine
(GlcNAc) and N-acetylgalactosamine (GalNAc) from
cellular substrates. One of these β-hexosaminidases, hexosaminidase
D (HexD), encoded by the HEXDC gene, has received
little attention. No mechanistic studies have focused on the role
of this unusual nucleocytoplasmically localized β-hexosaminidase,
and its cellular function remains unknown. Using a series of kinetic
and mechanistic investigations into HexD, we define the precise catalytic
mechanism of this enzyme and establish the identities of key enzymic
residues. The preparation of synthetic aryl N-acetylgalactosaminide
substrates for HexD in combination with measurements of kinetic parameters
for wild-type and mutant enzymes, linear free energy analyses of the
enzyme-catalyzed hydrolysis of these substrates, evaluation of the
reaction by nuclear magnetic resonance, and inhibition studies collectively
reveal the detailed mechanism of action employed by HexD. HexD is
a retaining glycosidase that operates using a substrate-assisted catalytic
mechanism, has a preference for galactosaminide over glucosaminide
substrates, and shows a pH optimum in its second-order rate constant
at pH 6.5–7.0. The catalytically important residues are Asp148
and Glu149, with Glu149 serving as the general acid/base residue and
Asp148 as the polarizing residue. HexD is inhibited by Gal-NAG-thiazoline
(Ki = 420 nM). The fundamental insights
gained from this study will aid in the development of potent and selective
probes for HexD, which will serve as useful tools to improve our understanding
of the physiological role played by this unusual enzyme.