Human UDP-Gal transporter 1 (hUGT1) and the human CMP-Sia transporter (hCST) are similar in structure, with amino acid sequences that are 43% identical, but they have quite distinct transport substrates. To define their substrate recognition regions, we constructed various chimeras between the two transporters and demonstrated that distinct submolecular regions of the transporter molecules are involved in the specific recognition of UDP-Gal and CMP-Sia (Aoki, K., Ishida, N., and Kawakita, M. (2001) J. Biol. Chem. 276, 21555-21561). In a further attempt to define the minimum submolecular regions required for the recognition of specific substrates, we found that substitution of helix 7 of hCST into the corresponding part of hUGT1 was necessary and sufficient for a chimera to show CST activity. Additional replacement of helix 2 or 3 of hUGT1 with the corresponding hCST sequence markedly increased the efficiency of CMP-Sia transport. For UGT activity, helices 1 and 8 of hUGT1 were necessary (but not sufficient), and helices 9 and 10 or helices 2, 3, and 7 derived from hUGT1 were also required to render the chimera competent for UDP-Gal transport. The in vitro analyses of a chimera with dual specificity indicated that it transported both UMP and CMP and mediated exchange reactions between these nucleotides and nucleotide sugars that are recognized specifically by either of the parental transporters.Nucleotide sugar transporters are membrane proteins localized in the endoplasmic reticulum and Golgi apparatus. They play an indispensable role in constructing the sugar chains of glycoconjugates. The transporters carry nucleotide sugars into the endoplasmic reticulum and Golgi apparatus, in which they are used by specific transferases as precursors of sugar chains (for recent reviews, see Refs. 1-5). More than simply functioning as a passive entrance route of nucleotide sugars into the organelles, the transporters may regulate the amounts of nucleotide sugars available in the lumen of the endoplasmic reticulum or Golgi apparatus and consequently may affect the sugar chain composition of a cell (6). To better understand the roles of transporters in regulating sugar chains and, in turn, various aspects of cellular functions, it is indispensable to define which substrate(s) each transporter recognizes and to understand how and with what stringency the transporter discriminates between its own substrate(s) and irrelevant nucleotide sugars.The functions of nucleotide sugar transporters have long been studied by analyzing the properties of transporter-deficient mutant cells and by in vitro characterization of the transport activity using microsomal fractions from natural sources. In recent years, the genes encoding several kinds of nucleotide sugar transporters have been cloned from several species (Refs. 7-12 and references therein) and have provided us with useful tools for studying the molecular and functional features of the transporters. For instance, functionally important subregions of the transporter molecules were defi...