One of the most important tasks in modern sport's training for the sport of highest achievements is the ability to control the state of the athlete's body in the process of training and competitive activities. For this purpose, the use of systems registering and analyzing information about the functional capabilities of an athlete in the dynamics of his activity, allows you to provide an individual approach when planning and correcting training loads. This is especially important for medical and pedagogical examination. The development of methods and means for increasing physical performance and, in particular, in the practice of high-performance sports, is one of the most important principles of modern sports medicine, physiology of labor and sports. In the practice of modern sports medicine, when carrying out mass examinations of athletes, the approach based on the proposed A.Z. Kolchinskaya concept on the regulation of the body's oxygen regimes, which allows to give a general characteristic of gas homeostasis, to diagnose the main syndromes associated with disorders of the transport of respiratory gases in the body, to assess the functional state of the body at all stages of the annual cycle of sports training and during the post-exercise recovery period. Since this work is associated with a large number of calculations and subsequent processing of the information received, it is necessary to use modern means of modern information support. Thus, the automated information system (AIS) for the functional diagnostics of athletes allows many times to speed up the processing of data obtained during the examination of athletes, centrally accumulate information for its preprocessing, storage and collective use of the AIS, is equipped with convenient services for graphical and tabular presentation of data, allows analyzing the dynamics of functional the state of athletes in the annual cycle of their training, as well as at the stage of the 4-year training Olympic cycle.