The gas-phase oxidation
of organic compounds is an important chemical
process in the Earth’s atmosphere. It governs oxidant levels
and controls the production of key secondary pollutants, and hence
has major implications for air quality and climate. Organic oxidation
is largely controlled by the chemistry of a few reactive intermediates,
namely, alkyl (R) radicals, alkoxy (RO) radicals, peroxy (RO2) radicals, and carbonyl oxides (R1R2COO),
which may undergo a number of unimolecular and bimolecular reactions.
Our understanding of these intermediates, and the reaction pathways
available to them, is based largely on studies of unfunctionalized
intermediates, formed in the first steps of hydrocarbon oxidation.
However, it has become increasingly clear that intermediates with
functional groups, which are generally formed later in the oxidation
process, can exhibit fundamentally different reactivity than unfunctionalized
ones. In this Perspective, we explore the unique chemistry available
to functionalized organic intermediates in the Earth’s atmosphere.
After a brief review of the canonical chemistry available to unfunctionalized
intermediates, we discuss how the addition of functional groups can
introduce new reactions, either by changing the energetics or kinetics
of a given reaction or by opening up new chemical pathways. We then
provide examples of atmospheric reaction classes that are available
only to functionalized intermediates. Some of these, such as unimolecular
H-shift reactions of RO2 radicals, have been elucidated
only relatively recently, and can have important impacts on atmospheric
chemistry (e.g., on radical cycling or organic aerosol formation);
it seems likely that other, as-yet undiscovered reactions of (multi)functional
intermediates may also exist. We discuss the challenges associated
with the study of the chemistry of such intermediates and review novel
experimental and theoretical approaches that have recently provided
(or hold promise for providing) new insights into their atmospheric
chemistry. The continued use and development of such techniques and
the close collaboration between experimentalists and theoreticians
are necessary for a complete, detailed understanding of the chemistry
of functionalized intermediates and their impact on major atmospheric
chemical processes.