“…27 Initial studies, determining bacterial colonization in resected ileal and colonic surgical specimens, identified significantly increased E. coli colony counts in CD, but not tissue from patients with UC or normal controls. 28 Recently, higher numbers of E. coli were also identified in neoterminal ileum of CD, especially in early recurrent disease when compared with normal control tissue. 29 Alternatively, PCR-based methods detected E. coli 16S rRNA and DNA more frequently in CD biopsy material than control tissue 30,31 In comparison to tissue infected with other enteric pathogens, immunohistochemistry identified E. coli antigens in biopsy material from 10 out of 16 CD patients, especially in ulcerations, lamina propria, and along fissures.…”