Abstract. The present study aimed to explore the molecular mechanisms associated with intervertebral disc degeneration (IDD) induced by tumor necrosis factor (TNF)-α and interleukin (IL)-1β. The microarray dataset no. GSE42611 was downloaded from the Gene Expression Omnibus database. The differentially expressed genes (DEGs) between four experimental nucleus pulposus samples and four control nucleus pulposus samples were analyzed. Subsequently, Gene Ontology (GO) and pathway enrichment analyses of DEGs were performed, followed by protein-protein interaction (PPI) network construction and prediction of a regulatory network of transcription factor (TFs). Finally, the transcriptional regulatory network was integrated into the PPI network to analyze the network modules. A total of 246 upregulated and 290 downregulated DEGs were identified. The upregulated DEGs were mainly associated with GO terms linked with inflammatory response and apoptotic pathways, while the downregulated DEGs were mainly associated with GO terms linked with cell adhesion and pathways of extracellular matrix -receptor interaction. In the PPI network, IL6, COL1A1, NFKB1 and HIF1A were hub genes, and in addition, NFKB1 and HIF1A were TFs. Pathways of apoptosis and extracellular matrix -receptor interaction may have important roles in IDD progression. IL6, COL1A1 and the TFs NFKB1 and HIF1A may be used as biomarkers for IDD diagnosis and treatment.
IntroductionIntervertebral discs lie between adjacent vertebrae in the spine, forming a fibrocartilaginous joint to allow slight movement of the vertebrae (1). The layers of fibrocartilage contain the nucleus pulposus, which functions as a shock absorber dissipating compressive forces outward from its center to the surrounding annulus fibrosus (2). However, the anulus fibrosus becomes weaker with increasing age (3), resulting in intervertebral disc degeneration (IDD). Beyond age 40, >60% of individuals show symptoms of IDD; furthermore, IDD is the most common cause of disability among workers aged 18-64 years (4). IDD is characterized by decreases in intervertebral disc function and height due to cell loss through apoptosis, increased breakdown of matrix or altered matrix synthesis, with the underlying pathological processes being complex (5-7).Numerous studies have intended to explore the molecular mechanisms involved in IDD. Vo et al (4) reported that IDD was a consequence of increased catabolism of the extracellular matrix (ECM), since the proteolytic degradation of ECM macromolecules led to marked structural changes of the intervertebral disc. These catabolic processes are mediated by a number of cytokines in the nucleus pulposus, among which interleukin (IL)-1β and tumor necrosis factor (TNF)-α have been suggested to have crucial roles in the development of IDD. However, the involvement of IL-1β and TNF-α in IDD has remained to be fully elucidated.Markova et al (8) cultured rat intervertebral discs in the presence of IL-1β, TNF-α and serum-limiting conditions to mimic a degenerative insult to ident...