Circoviruses lack an autonomous DNA polymerase and are dependent on the replication machinery of the host cell for de novo DNA synthesis. Accordingly, the viral DNA needs to cross both the plasma membrane and the nuclear envelope before replication can occur. Here we report on the subcellular distribution of the beak and feather disease virus (BFDV) capsid protein (CP) and replication-associated protein (Rep) expressed via recombinant baculoviruses in an insect cell system and test the hypothesis that the CP is responsible for transporting the viral genome, as well as Rep, across the nuclear envelope. The intracellular localization of the BFDV CP was found to be directed by three partially overlapping bipartite nuclear localization signals (NLSs) situated between residues 16 and 56 at the N terminus of the protein. Moreover, a DNA binding region was also mapped to the N terminus of the protein and falls within the region containing the three putative NLSs. The ability of CP to bind DNA, coupled with the karyophilic nature of this protein, strongly suggests that it may be responsible for nuclear targeting of the viral genome. Interestingly, whereas Rep expressed on its own in insect cells is restricted to the cytoplasm, coexpression with CP alters the subcellular localization of Rep to the nucleus, strongly suggesting that an interaction with CP facilitates movement of Rep into the nucleus.Circoviruses are animal viruses that have small (ϳ2-kb), covalently closed, circular, single-stranded DNA (ssDNA) genomes encapsidated within nonenveloped icosahedral virions (8). Members of the family Circoviridae are divided into genera based on their specific genome organization and host range. Porcine circovirus type 1 (PCV1), Porcine circovirus type 2 (PCV2) (12), and Beak and feather disease virus (BFDV) are the only formally recognized members of the genus Circovirus. In recent years, a number of novel circovirus-like viruses have been identified in nonpsittacine avian species. These include Columbid circovirus (34), Goose circovirus (34), Canary circovirus (29), and Duck circovirus (14), which have all been tentatively classified as members of the genus. All of these viruses possess ambisense genomes with two major open reading frames (ORFs) carried on opposite strands of the replicative double-stranded DNA (dsDNA) intermediate (33). These encode the replication-associated protein (Rep) and capsid protein (CP) from the virion and complementary strands, respectively (25, 27) (23, 26).Circoviruses are dependent on the replication machinery of the host cell for de novo DNA synthesis (26). Although Rep is required to initialize viral replication, continuation of the process is dependent upon cellular enzymes expressed during S phase and commences only after the host cell has passed through mitosis (32). Since DNA synthesis occurs exclusively in the nucleus, the viral DNA needs to cross both the plasma membrane and the nuclear envelope before a productive infection can be established. The strict size limitations associated w...