Escherichia coli produces an inducible set of proteins that protect the cell from exogenous peroxide stress. A subset of these genes is induced by hydrogen peroxide and is controlled at the transcriptional level by the OxyR protein. To identify additional genes involved in protection from hydrogen peroxide, a library of random transcriptional fusions of placMu53 was screened for hydrogen peroxide sensitivity and 27 such mutants were identified. These fusions were transduced into nonlysogenic strains to ensure that the phenotypes observed were the result of a single mutation. The mutants were grouped into three classes based on the expression of the lacZ fusion during growth in oxyR ؉ and ⌬oxyR backgrounds. The expression of the lacZ fusion in 8 mutants was independent of OxyR, 10 mutants required OxyR for expression, and 6 mutants showed reduced levels of expression in the presence of OxyR. OxyR dependence varied from 2-to 50-fold in these mutants. The OxyR-dependent phenotype was complemented by a plasmid-borne copy of oxyR gene in all mutants. Three mutants exhibited dual regulation by OxyR and RpoS. We sequenced the fusion junctions of several of these mutants and identified the genetic loci responsible for the hydrogen peroxide-sensitive (hps) phenotype. In this study, we report the identification of several genes that require OxyR for expression, including hemF (encoding coproporphyrinogen III oxidase), rcsC (encoding a sensor-regulator protein of capsular polysaccharide synthesis genes), and an open reading frame, f497, that is similar to arylsulfatase-encoding genes.All aerobic respiring organisms require protection from reactive oxygen species (including superoxide anion, hydroxyl radical, and hydrogen peroxide) formed from the partial reduction of molecular oxygen to water during oxidative metabolism. Bacterial cells encounter endogenous hydrogen peroxide produced from the dismutation of superoxide or hydroxyl radical as a product of the respiratory chain when oxygen is used as the terminal electron acceptor. In addition, enteric bacteria, such as Salmonella typhimurium and Escherichia coli, encounter toxic levels of hydrogen peroxide produced by macrophages during engulfment (17). E. coli and S. typhimurium possess several enzymes that prevent oxidative damage (alkyl hydroperoxidase, catalases, superoxide dismutase, and glutathione reductase) and repair DNA lesions resulting from oxidative damage (e.g., exonuclease III, RecBC nuclease, and endonuclease III) (for a review, see reference 16). It has been shown that both E. coli (14) and S. typhimurium (49) become resistant to killing by hydrogen peroxide when pretreated with a nonlethal dose (60 M) of hydrogen peroxide. The adaptation results in the transient accumulation of a distinct group of proteins (10, 28). There are 30 proteins that exhibit elevated level of synthesis, of which 12 proteins are induced immediately after the hydrogen peroxide challenge and 18 proteins are expressed 10 to 30 min after hydrogen peroxide treatment (10). The induction o...