An apurinic endonuclease activity has been characterized in yeast mitochondria. It is dependent on Mg2+, stimulated by about 50% in the presence of 50 mM NaCl and inhibited at higher NaCl concentrations. It is located in the inner mitochondrial membrane and requires high concentrations of detergent (1 .5 -3 ' ; / ; ) Triton X-100) to be extracted. The same treatment extracts several other endonuclease activiriey : the two Mg2+-dependent endonuclease activities cleaving double-stranded DNA at pH 7.5 and 5.4 respect ikely, the ethidiumbromide-stimulated endonuclease activity, the endonuclease activity cleaving single-stranded DNA at pH 7.5 [Jacqueniin-Sablon et al.(1 979) Biochrrnistry, 18, 1 I9 -1271, and a manganese-stimulated deoxyribonucleasc activity cleaving double-stranded DNA at pH 7.5 which has been discovered during the present work. Another endonuclease activity cleaving double-stranded DNA at pH 7.5 in the presence of Mg2+, \lightly stimulated by low NaCl concentrations and inhibited by ethidium bromide is extracted from the membrane pellet remaining after the treatment with 1.5% Triton X-100 by a second treatment with 1.5% Triton X-100 plus I M KCI. The presence in the mitochondrial membrane of this apurinic endonuclease activity indicii tc\ that, like nuclear and prokaryotic DNA, yeast mitochondrial DNA is also subject to specialized repair s! \ i k ' i i i s .Cytoplasmic petites (or Q-) which are produced by large deletions of the mitochondrial DNA, accompanied by amplifications of the retained sequences [I] are induced in SaccharotnjmJ.r cerevisiue at very high frequency by a large number of chemical and physical agents [2]. From the genetic and physiological observations that mitochondrial lesions induced by ultraviolet light can be repaired in certain conditions [3,4], although the pyrimidine dimers are not removed by excision repair [5,6], it has been proposed that repair in yeast mitochondria depends mainly on recombination and/or replication of the damaged mitochondrial DNA [S].In order to determine whether specialized repair systems exist in yeast mitochondria, we have choosen to identify an apurinic endonuclease activity, since this type of enzyme has been characterized in a large number of organisms [7-111 and has also been reported in rat liver mitochondria [12]. In this communication, we report the existence of an apurinic endonuclease activity in the inner membrane of yeast mitochondria, which can be extracted from the membrane by high concentrations of detergents. In addition, the study of the properties of the apurinic endonuclease activity has led us to the discovery of a new deoxyribonuclease activity stimulated by manganese, an interesting property, since this divalent cation is highly mutagenic in yeast mitochondria [13]. We show that the apurinic endonuclease activity and the manganese-stimulated deoxyribonuclease are extracted from the mitochondrial membrane with several ot her endonuclease activities, some of which have been reported previously [14.15].Our results lead to the c...