During lytic infections, the herpes simplex virus (HSV) virion host shutoff (Vhs) endoribonuclease degrades many host and viral mRNAs. Within infected cells it cuts mRNAs at preferred sites, including some in regions of translation initiation. Vhs binds the translation initiation factors eIF4H, eIF4AI, and eIF4AII, suggesting that its mRNA degradative function is somehow linked to translation. To explore how Vhs is targeted to preferred sites, we examined the in vitro degradation of a target mRNA in rabbit reticulocyte lysates containing in vitro-translated Vhs. Vhs caused rapid degradation of mRNAs beginning with cleavages at sites in the first 250 nucleotides, including a number near the start codon and in the 5= untranslated region. Ligation of the ends to form a circular mRNA inhibited Vhs cleavage at the same sites at which it cuts capped linear molecules. This was not due to an inability to cut any circular RNA, since Vhs cuts circular mRNAs containing an encephalomyocarditis virus (EMCV) internal ribosome entry site (IRES) at the same sites as linear molecules with the IRES. Cutting linear mRNAs at preferred sites was augmented by the presence of a 5= cap. Moreover, mutations that altered the 5= proximal AUG abolished Vhs cleavage at nearby sites, while mutations that changed sequences surrounding the AUG to improve their match to the Kozak consensus sequence enhanced Vhs cutting near the start codon. The results indicate that mutations in an mRNA that affect its translation affect the sites at which it is cut by Vhs and suggest that Vhs is directed to its preferred cut sites during translation initiation.
During lytic herpes simplex virus (HSV) infections, viral and cellular gene expressions are regulated at multiple steps of mRNA metabolism (1, 2), including transcription (2-8), splicing (2, 9-12), transport from the nucleus to the cytoplasm (2, 13-20), translation (21-32), and stabilization of mRNAs in the cytoplasm (33-43). Among the posttranscriptional controls are the regulation of mRNA half-lives (36-42) and translation (23,29) by the HSV virion host shutoff (Vhs) protein (UL41). Vhs is an endoribonuclease (33,(44)(45)(46)(47) that is a minor component of virions (48)(49)(50). At early times, copies of Vhs from infecting virions accelerate the degradation of many housekeeping and constitutively expressed cellular mRNAs (40,42,48,(51)(52)(53)(54)(55), with a concomitant downturn in the levels of those mRNAs and in the synthesis of the proteins that they encode (52,56,57). Following the onset of viral transcription, Vhs ensures the rapid turnover of most, if not all, viral mRNAs (36, 37, 57-60). In so doing, it helps determine viral mRNA levels and facilitates the sequential expression of different classes of viral mRNAs (38). Significantly, during animal infections, Vhs impedes the establishment of an interferon-induced antiviral state (61-67). It blocks the activation of dendritic cells (68-70) and inhibits other components of the innate and adaptive immune responses (41,(71)(72)(73)(74)(75). As su...