The interaction between hepatitis C virus (HCV) and cellular immune responses during very early infection is critical for disease outcome. To date, the impact of antigen-specific cellular immune responses on the evolution of the viral population establishing infection and on potential escape has not been studied. Understanding these early host-virus dynamics is important for the development of a preventative vaccine. Three subjects who were followed longitudinally from the detection of viremia preseroconversion until disease outcome were analyzed. The evolution of transmitted/founder (T/F) viruses was undertaken using deep sequencing. CD8؉ T cell responses were measured via enzyme-linked immunosorbent spot (ELISpot) assay using HLA class I-restricted T/F epitopes. T/F viruses were rapidly extinguished in all subjects associated with either viral clearance (n ؍ 1) or replacement with viral variants leading to establishment of chronic infection (n ؍ 2). CD8؉ T cell responses against 11 T/F epitopes were detectable by 33 to 44 days postinfection, and 5 of these epitopes had not previously been reported. These responses declined rapidly in those who became chronically infected and were maintained in the subject who cleared infection. Higher-magnitude CD8 ؉ T cell responses were associated with rapid development of immune escape variants at a rate of up to 0.1 per day. Rapid escape from CD8 ؉ T cell responses has been quantified for the first time in the early phase of primary HCV infection. These rapid escape dynamics were associated with higher-magnitude CD8 ؉ T cell responses. These findings raise questions regarding optimal selection of immunogens for HCV vaccine development and suggest that detailed analysis of individual epitopes may be required.
Following primary hepatitis C virus (HCV) infection, approximately 75% of individuals fail to clear the virus (1), resulting in chronic hepatitis, progressive fibrosis, and increased risk of liver failure and hepatocellular carcinoma (2). Due to the high mutation rate, HCV exists within each infected host as a diverse, rapidly evolving population. However, the majority of new infections are initiated by only a few (1 to 3) unique transmitted/founder (T/F) variants (3, 4). To date, there has been no study of the selective pressures exerted by adaptive immune responses against HCV T/F viruses. Previous studies have investigated the immune response using reference consensus viral antigens in primary HCV infection and documented both HCV-specific CD4 ϩ and CD8 ϩ responses (5, 6), but these studies are limited by their focus on late stages of infection (i.e., after seroconversion) (7-10). It therefore remains unresolved whether the host T cell response targets viral populations that successfully establish a new infection and provides early selection pressure for viral evolution and immune escape. Understanding these mechanisms is important for the selection of immunogens for T cell-based vaccines that confer protection (3,8,(10)(11)(12).
HCV can escape CD8ϩ T c...