Nitric oxide synthase (NOS) catalyzes the NADPHand O 2 -dependent conversion of L-arginine to nitric oxide (NO) and citrulline; three isoforms, the neuronal (nNOS), endothelial, and inducible, have been identified. Because overproduction of NO is known to contribute to several pathophysiological conditions, NOS inhibitors are of interest as potential therapeutic agents. Inhibitors that are potent, mechanism-based, and relatively selective for the NOS isoform causing pathology are of particular interest. In the present studies we report that vinyl-L-NIO (N 5 -(1-imino-3-butenyl)-L-ornithine; L-VNIO) binds to and inhibits nNOS in competition with L-arginine (K i ؍ 100 nM); binding is accompanied by a type I optical difference spectrum consistent with binding near the heme cofactor without interaction as a sixth axial heme ligand. Such binding is fully reversible. However, in the presence of NADPH and O 2 , L-VNIO irreversibly inactivates nNOS (k inact ؍ 0.078 min ؊1 ; K I ؍ 90 nM); inactivation is Ca 2؉ /calmodulin-dependent. The cytochrome c reduction activity of the enzyme is not affected by such treatment, but the L-arginine-independent NADPH oxidase activity of nNOS is lost in parallel with the overall activity. Spectral analyses establish that the nNOS heme cofactor is lost or modified by L-VNIO-mediated mechanism-based inactivation of the enzyme. The inducible isoform of NOS is not inactivated by L-VNIO, and the endothelial isoform requires 20-fold higher concentrations to attain ϳ75% of the rate of inactivation seen with nNOS. Among the NOS inactivating L-arginine derivatives, L-VNIO is the most potent and nNOS-selective reported to date.Nitric oxide synthase (NOS) 1 catalyzes the oxidation of Larginine to nitric oxide (NO) and citrulline; NADPH and O 2 are cosubstrates (1-3). Three major isoforms of NOS have been identified to date. The neuronal (nNOS) and endothelial (eNOS) isoforms are constitutively expressed and are regulated by Ca 2ϩ /calmodulin, whereas the activity of the inducible isoform (iNOS) is controlled transcriptionally and is not affected by changes in intracellular Ca 2ϩ . Although amino acid sequence homology among the isoforms is limited (ϳ50%) (3), all are comprised of a C-terminal reductase domain that binds NADPH and the cofactors FAD and FMN and a N-terminal oxygenase domain that binds L-arginine and the heme and tetrahydrobiopterin (BH 4 ) cofactors (1-3). The reductase domain is related in function and amino acid sequence to cytochrome P450 reductase (4), whereas the oxygenase domain is related in function (but not sequence) to the cytochromes P450. Binding of Ca 2ϩ /calmodulin to a region between the domains permits electron flow from the reductase domain to the oxygenase domain and also stimulates electron flow within the reductase domain (5). The resulting reduction of the heme cofactor allows O 2 to be activated, permitting the cytochrome P450-like oxidation of L-arginine to N -hydroxy-L-arginine and the subsequent further oxidation of that tightly bound intermediate to c...