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2003
DOI: 10.1099/vir.0.19196-0
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In vivo transcription of the Epstein–Barr virus (EBV) BamHI-A region without associated in vivo BARF0 protein expression in multiple EBV-associated disorders

Abstract: The in vivo expression of the Epstein-Barr virus (EBV) BamHI-A rightward transcripts (BARTs) as well as the putative BART-encoded BARF0 and RK-BARF0 proteins in various EBV-associated malignancies was investigated. RT-PCRs specific for the different splice variants of the BARTs and both a nucleic acid sequence-based amplification assay and an RT-PCR specific for the BARF0 ORF were used. Abundant transcription of BARTs was found in EBV-associated Hodgkin's lymphomas, Burkitt's lymphomas (BL), T-cell non-Hodgkin… Show more

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Cited by 24 publications
(13 citation statements)
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“…The cDNA was used as template for PCR in the presence of primer pairs specific for HER2, HER3, and EBV transcripts such as EBNA1, EBER1, BARF0, RK-BARF0, EBNA2, LMP1, LMP2A, and Zta. Sequences of primer pairs used for detection of mRNA expression were as follows (described as 5Ј end primer and 3Ј end primer, respectively); HER2, 5Ј-ATGTATTTGATGGTGACCTG-3Ј and 5Ј-TC TTGGCCCTTTCCAGAGTG-3Ј; HER3, 5Ј-GGGAGCCGCTTCCAGACT-3Ј and 5Ј-TTGAGGCCGGTGATCAGAAA-3Ј (47); EBNA1, 5Ј-GATGAGCGTT TGGGAGAGCTGATTCTGCA-3Ј (gEBNA1-a, from nt 67511 to 67539 of the B95.8 sequence) and 5Ј-TCCTCGTCCATGGTTATCAC-3Ј (gEBNA1-b, from nt 108075 to 108056 of the B95.8 sequence) (60); EBER1, 5Ј-CTACGCTGCC CTAGAGGTTTTGCTA-3Ј (EBER1-1, from nt 6634 to 6658 of the B95.8 sequence) and 5Ј-ATGCGGACCACCAGCTGGTACTTGA-3Ј (EBER1-2, from nt 6790 to 6766 of the B95.8 sequence) (61); BARF0, 5Ј-TGTCCAGCGCTCT GGTCG-3Ј (BARF-LLW5Ј, from nt 160586 to 160603 of the B95.8 sequence) and 5Ј-CCACGGCAACCCTTCCAC-3Ј (BARF-2, from nt 160812 to 160795 of the B95.8 sequence) (31); RK-BARF0, 5Ј-CGCTGAGGACTGCAAACTCC-3Ј (RKBF0-P, from nt 160245 to 160264 of the B95.8 sequence) and 5Ј-CCATGC TATCGGTGCAACG-3Ј (RKBF0-FL, from nt 160512 to 160494 of the B95.8 sequence) (64); EBNA2, 5Ј-ACTTTGAGCCACCCACAGTAACCA-3Ј (EBNA2-1, from nt 47912 to 47935 of the B95.8 sequence) and 5Ј-TGGAGTGTCTGACA GTTGTTCCTG-3Ј (EBNA2-2, from nt 48635 to 48612 of the B95.8 sequence) (7); LMP1, 5Ј-CTTCAGAAGAGACCTTCTCT-3Ј (LMP1-1, from nt 169262 to 169243 of the B95.8 sequence) and 5Ј-ACAATGCCTGTCCGTGCAAA-3Ј (LMP1-2, from nt 169081 to 169100 of the B95.8 sequence) (63); LMP2A, 5Ј-ATGACTCATCTCAACACATA-3Ј (LMP2A-F, from nt 166874 to 166893 of the B95.8 sequence) and 5Ј-CATGTTAGGCAAATTGCAAA-3Ј (LMP2A-R, from nt 381 to 362 of the B95.8 sequence) (28); Zta, 5Ј-TTCCACAGCCTGCA CCAGTG-3Ј (Z1, from nt 102719 to 102700 of the B95.8 sequence) and 5Ј-GG CAGCAGCCACCTCACGGT-3Ј (Z2, from nt 102330 to 102341 and 102426 to 102433 of the B95.8 sequence) (63). The S26 was used as an internal control (65).…”
Section: Methodsmentioning
confidence: 99%
“…The cDNA was used as template for PCR in the presence of primer pairs specific for HER2, HER3, and EBV transcripts such as EBNA1, EBER1, BARF0, RK-BARF0, EBNA2, LMP1, LMP2A, and Zta. Sequences of primer pairs used for detection of mRNA expression were as follows (described as 5Ј end primer and 3Ј end primer, respectively); HER2, 5Ј-ATGTATTTGATGGTGACCTG-3Ј and 5Ј-TC TTGGCCCTTTCCAGAGTG-3Ј; HER3, 5Ј-GGGAGCCGCTTCCAGACT-3Ј and 5Ј-TTGAGGCCGGTGATCAGAAA-3Ј (47); EBNA1, 5Ј-GATGAGCGTT TGGGAGAGCTGATTCTGCA-3Ј (gEBNA1-a, from nt 67511 to 67539 of the B95.8 sequence) and 5Ј-TCCTCGTCCATGGTTATCAC-3Ј (gEBNA1-b, from nt 108075 to 108056 of the B95.8 sequence) (60); EBER1, 5Ј-CTACGCTGCC CTAGAGGTTTTGCTA-3Ј (EBER1-1, from nt 6634 to 6658 of the B95.8 sequence) and 5Ј-ATGCGGACCACCAGCTGGTACTTGA-3Ј (EBER1-2, from nt 6790 to 6766 of the B95.8 sequence) (61); BARF0, 5Ј-TGTCCAGCGCTCT GGTCG-3Ј (BARF-LLW5Ј, from nt 160586 to 160603 of the B95.8 sequence) and 5Ј-CCACGGCAACCCTTCCAC-3Ј (BARF-2, from nt 160812 to 160795 of the B95.8 sequence) (31); RK-BARF0, 5Ј-CGCTGAGGACTGCAAACTCC-3Ј (RKBF0-P, from nt 160245 to 160264 of the B95.8 sequence) and 5Ј-CCATGC TATCGGTGCAACG-3Ј (RKBF0-FL, from nt 160512 to 160494 of the B95.8 sequence) (64); EBNA2, 5Ј-ACTTTGAGCCACCCACAGTAACCA-3Ј (EBNA2-1, from nt 47912 to 47935 of the B95.8 sequence) and 5Ј-TGGAGTGTCTGACA GTTGTTCCTG-3Ј (EBNA2-2, from nt 48635 to 48612 of the B95.8 sequence) (7); LMP1, 5Ј-CTTCAGAAGAGACCTTCTCT-3Ј (LMP1-1, from nt 169262 to 169243 of the B95.8 sequence) and 5Ј-ACAATGCCTGTCCGTGCAAA-3Ј (LMP1-2, from nt 169081 to 169100 of the B95.8 sequence) (63); LMP2A, 5Ј-ATGACTCATCTCAACACATA-3Ј (LMP2A-F, from nt 166874 to 166893 of the B95.8 sequence) and 5Ј-CATGTTAGGCAAATTGCAAA-3Ј (LMP2A-R, from nt 381 to 362 of the B95.8 sequence) (28); Zta, 5Ј-TTCCACAGCCTGCA CCAGTG-3Ј (Z1, from nt 102719 to 102700 of the B95.8 sequence) and 5Ј-GG CAGCAGCCACCTCACGGT-3Ј (Z2, from nt 102330 to 102341 and 102426 to 102433 of the B95.8 sequence) (63). The S26 was used as an internal control (65).…”
Section: Methodsmentioning
confidence: 99%
“…There are three types of latency in EBV infections depending on the expression patterns of the latent proteins (4). EBV-encoded RNAs (EBERs) and BamHI A rightward transcripts (BARTs) are expressed in all three latency types (4,5). EBV expresses 25 different pre-microRNAs (6)(7)(8).…”
mentioning
confidence: 99%
“…The BARTs also contain several open reading frames, BARF0, RK-BARF0, A73, and RPMS1 (15,18,25,27,34,47,52,53). Although it has been difficult to convincingly demonstrate expression of the protein products of these open reading frames in EBV-infected cells (62), immunological data suggestive of protein expression have been obtained. Cytotoxic T cells isolated from healthy seropositive donors recognized BARF0-transfected cells (28), and serum from patients with nasopharyngeal carcinoma precipitated in vitro-translated BARF0 polypeptides (18).…”
mentioning
confidence: 99%