“…The first two principal components of this result were plotted using the ggscatter function ( https://rpkgs.datanovia.com/ggpubr/reference/ggscatter.html ) from the R package ggpubr ( https://cran.r-project.org/web/packages/ggpubr/index.html ), 107 and the weight of each gene’s contribution to the principal components were extracted for PC1 and PC2. The datasets used in the PCA were: GSM4616525, GSM4616526, GSM4616527 (dog iPS), GSM4617887, GSM4617889, GSM4617890, GSM4617891, GSM46 17895, GSM4617900, GSM4617901 (marmoset iPS), GSM4616532 (human iPS), GSM4616535, GSM4616536 (pigiPS) from study GSE152493, 95 GSM1287734, GSM1287735, GSM1287745, GSM1287746 (mouse ESC), GSM1287736, GSM1287747, GSM128 7748 (mouse iPS), GSM1287749, GSM1287750 (mouse fibroblasts, MEF) from GSE53212, 96 and GSM4303994, GSM4303995 (human naïve ES), GSM4304018, GSM4304019 (human primed ES) from GSE144994. 97 Note, that each analysis only induced genes that were annotated in all of the respective species.…”