Several historical findings have led to the development of a plasma-derived virus inactivated concentrate largely composed of factor IX with only traces of the other vitamin K dependent clotting factors and used exclusively for treating factor IX deficient patients (haemophilia B). The observations that have led to the identification of haemophilia B as a different entity from haemophilia A will be reviewed first. The development of a plasma-derived product for replacement therapy in haemophilia B patients, the specific complications associated with its use, and the approaches taken to try to understand and prevent these complications, will be considered next. The development of techniques that allowed the separation of factor IX from the other vitamin K dependent clotting factors will be reviewed, as will the characteristics of Coagulation Factor IX apart from the other vitamin K dependent clotting factors. The characteristics of Coagulation Factor IX for therapeutic use and the results obtained using animal models will also be analysed. The advances that have resulted in the decreased risk of virus transmission due to more detailed screening of blood donors and submitting the concentrate to a virus inactivation treatment will not be considered here.