Abstract:Constructing a minimal machinery for autonomous self-division of synthetic cells is a major goal of bottom-up synthetic biology. One paradigm has been the E. coli divisome, with the MinCDE protein system guiding assembly and positioning of a presumably contractile ring based on FtsZ and its membrane adaptor FtsA. Here, we demonstrate the full in vitro reconstitution of this machinery consisting of five proteins within lipid vesicles, allowing to observe the following sequence of events in real time: 1) Assembl… Show more
“…The temperature-induced contraction would in principle be compatible with liposome-encapsulation and the contraction force could potentially be sufficiently high to induce vesicle deformation ( 23 ). It could be complemented by engineered molecular motors that walk on DNA nanotubes ( 25 ). For ring disassembly, which will be necessary to complete the division of the compartment, it is plausible to use mechanisms that have already been described for DNA nanotubes ( 11, 12, 15 ).…”
Contractile rings formed from cytoskeletal filaments mediate the division of cells. The reverse-engineering of synthetic contractile rings could shed light on fundamental physical principles of the ring self-assembly and dynamics independent of the natural protein-based compounds. Here, we engineer DNA nanotubes and crosslink them with a synthetic peptide-functionalized star-PEG construct. The star-PEG construct induces the formation of DNA nanotube bundles composed of several tens of individual DNA nanotubes. Importantly, the DNA nanotube bundles curve into closed micron-scale DNA rings in a high-yield one-pot self-assembly process resulting in several thousand rings per microliter. The crosslinked DNA rings can undergo contraction to less than half of their initial diameter by two distinct mechanisms, triggered by increasing molecular crowding or temperature. DNA-based contractile rings expand the toolbox of DNA nanotechnology and could be a future element of an artificial division machinery in synthetic cells.
“…The temperature-induced contraction would in principle be compatible with liposome-encapsulation and the contraction force could potentially be sufficiently high to induce vesicle deformation ( 23 ). It could be complemented by engineered molecular motors that walk on DNA nanotubes ( 25 ). For ring disassembly, which will be necessary to complete the division of the compartment, it is plausible to use mechanisms that have already been described for DNA nanotubes ( 11, 12, 15 ).…”
Contractile rings formed from cytoskeletal filaments mediate the division of cells. The reverse-engineering of synthetic contractile rings could shed light on fundamental physical principles of the ring self-assembly and dynamics independent of the natural protein-based compounds. Here, we engineer DNA nanotubes and crosslink them with a synthetic peptide-functionalized star-PEG construct. The star-PEG construct induces the formation of DNA nanotube bundles composed of several tens of individual DNA nanotubes. Importantly, the DNA nanotube bundles curve into closed micron-scale DNA rings in a high-yield one-pot self-assembly process resulting in several thousand rings per microliter. The crosslinked DNA rings can undergo contraction to less than half of their initial diameter by two distinct mechanisms, triggered by increasing molecular crowding or temperature. DNA-based contractile rings expand the toolbox of DNA nanotechnology and could be a future element of an artificial division machinery in synthetic cells.
“…10(e) and (f)). 78 In addition, other protein systems, for example, bundled actin filaments, can also be used to construct contractile actomyosin rings in liposomes to govern the vesicle shapes. 79 Alternatively, the endosomal sorting complex required for transport (ESCRT) proteins which form a multicomplex sorting machinery that controls multivesicular body formation in vivo, can also induce budding and complete division of GUVs.…”
In this review, we summarize the strategies of inducing division in synthetic cells by using physical, chemical, and biological stimuli, and highlight the future challenges to the construction of autonomous synthetic cell division.
“…Cell-free expression systems have been crucial in bottom-up synthetic biology, and have an enormous potential to be further utilized in various experimental setups by proper choice and optimization of the configuration, such as cell types and cell lysate or purified components-based systems. In this study, we chose the E. coli -based cell-free synthesis platform called PURE system ( 35 ), because it has been demonstrated that the PURE system can synthesize Min proteins, and that such cell-free expressed MinD and MinE proteins can self-organize into dynamic wave patterns in vitro in cell-mimicking environments such as lipid containers ( 36, 37 ).…”
Recently, utilization of machine learning (ML)-based methods has led to astonishing progress in protein design and, thus, the design of new biological functionality. However, emergent functions that require higher-order molecular interactions, such as the ability to self-organize, are still extremely challenging to implement. Here, we describe a comprehensivein silico,in vitro, andin vivoscreening pipeline (i3-screening) to develop and validate ML-designed artificial homologs of a bacterial protein that confers its role in cell division through the emergent function of spatiotemporal pattern formation. Moreover, we present complete substitution of a wildtype gene by an ML-designed artificial homolog inEscherichia coli. These results raise great hopes for the next level of synthetic biology, where ML-designed synthetic proteins will be used to engineer cellular functions.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.