2016
DOI: 10.1146/annurev-anchem-071015-041627
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In Situ and In Vivo Molecular Analysis by Coherent Raman Scattering Microscopy

Abstract: Coherent Raman scattering (CRS) microscopy is a high-speed vibrational imaging platform with the ability to visualize the chemical content of a living specimen by using molecular vibrational fingerprints. We review technical advances and biological applications of CRS microscopy. The basic theory of CRS and the state-of-the-art instrumentation of a CRS microscope are presented. We further summarize and compare the algorithms that are used to separate the Raman signal from the nonresonant background, to denoise… Show more

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Cited by 44 publications
(24 citation statements)
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References 148 publications
(205 reference statements)
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“…In comparison with spectral imaging, by which multiple wavelengthdependent images are obtained, spectroscopic imaging aims to achieve the vibrational-modedependent deconvolution of images with spectral data sets. The use of spectroscopic imaging has become prominent for coherent or nonlinear Raman imaging methods [1][2][3][4][5][6][7][8][9], among which coherent anti-Stokes Raman scattering (CARS) and stimulated Raman scattering (SRS) are two methods that are often used. Based on the CARS and SRS imaging techniques, several kinds of spectroscopic imaging have been reported, such as the multiplex method [10][11][12][13][14][15][16], laser-wavelength-scanning method [17][18][19], spectral focusing method [20], FT-CARS [21][22][23], and dual-comb method [24].…”
Section: Introductionmentioning
confidence: 99%
“…In comparison with spectral imaging, by which multiple wavelengthdependent images are obtained, spectroscopic imaging aims to achieve the vibrational-modedependent deconvolution of images with spectral data sets. The use of spectroscopic imaging has become prominent for coherent or nonlinear Raman imaging methods [1][2][3][4][5][6][7][8][9], among which coherent anti-Stokes Raman scattering (CARS) and stimulated Raman scattering (SRS) are two methods that are often used. Based on the CARS and SRS imaging techniques, several kinds of spectroscopic imaging have been reported, such as the multiplex method [10][11][12][13][14][15][16], laser-wavelength-scanning method [17][18][19], spectral focusing method [20], FT-CARS [21][22][23], and dual-comb method [24].…”
Section: Introductionmentioning
confidence: 99%
“…Vibrational imaging by SRS is a rapidly growing field. [20][21][22][23][24] It is becoming the most powerful vibrational microscopy for biology, owing to its superb sensitivity, imaging speed, three-dimensional optical sectioning, Raman spectral fidelity, a strict linear concentration dependence, straightforward image interpretation, and quantification. [20][21][22][23][24][25][26][27][28] Recently, a new bioorthogonal imaging strategy is emerging, by introducing vibrational tags such as deuterium or alkyne labels to small biomolecules.…”
Section: Introductionmentioning
confidence: 99%
“…[20][21][22][23][24] It is becoming the most powerful vibrational microscopy for biology, owing to its superb sensitivity, imaging speed, three-dimensional optical sectioning, Raman spectral fidelity, a strict linear concentration dependence, straightforward image interpretation, and quantification. [20][21][22][23][24][25][26][27][28] Recently, a new bioorthogonal imaging strategy is emerging, by introducing vibrational tags such as deuterium or alkyne labels to small biomolecules. [29][30][31][32] Through deuterium labeling in amino acids, glucose, cholesterol, and fatty acids, SRS microscopy was applied to visualize protein synthesis, 32 de novo lipogenesis, 33 intracellular cholesterol storage, 34 and metabolic activity in live tissues.…”
Section: Introductionmentioning
confidence: 99%
“…3 This technique results in intensity gain at the Stokes frequency, Stimulated Raman Gain (SRG), and intensity loss at the pump frequency, Stimulated Raman Loss (SRL). 4 Both the SRG and SRL signals can be orders of magnitude higher than the spontaneous Raman signal, and either may be used for molecular detection or imaging. 5,6 The increased stimulated Raman signal enables high sensitivity detection and high contrast imaging with fast integration times and low laser excitation powers, all of which are critical to biomedical applications.…”
Section: Introductionmentioning
confidence: 99%