Abstract. Field measurements have shown that cold-season methane (CH4) and carbon dioxide (CO2) emissions contribute a substantial portion to the annual net carbon emissions in permafrost regions. However, most earth system land models do not accurately reproduce cold-season CH4 and CO2 emissions, especially over the shoulder (i.e., thawing and freezing) seasons. Here we use the Energy Exascale Earth System Model (E3SM) land model version 1 (ELMv1-ECA) to tackle this challenge and fill the knowledge gap of how cold-season CH4 and CO2 emissions contribute to the annual totals at Alaska Arctic tundra sites. Specifically, we improved the ELMv1-ECA soil water phase-change scheme, environmental controls on microbial activity, and cold-season methane transport module. Results demonstrate that both soil temperature and the duration of zero-curtain periods (i.e., the fall period when soil temperatures linger around 0 °C) simulated by the updated ELMv1-ECA were greatly improved, e.g., the Mean Absolute Error in zero-curtain durations at 12 cm depth was reduced by 62 % on average. Furthermore, the simulated cold-season emissions at three tundra sites were improved by 84 % and 81 % on average for CH4 and CO2, respectively. Overall, CH4 and CO2 emitted during the early cold season (Sep. and Oct.), which often includes most of the zero-curtain period in Arctic tundra, accounted for more than 50 % of the total emissions throughout the entire cold season (Sep. to May). From 1950 to 2017, both CO2 emissions during the 12 cm depth zero-curtain period and during the entire cold season showed increasing trends, for example, of 0.26 g C m−2 year−1 and 0.38 g C m−2 year−1 at Atqasuk. This study highlights the importance of zero-curtain periods in facilitating CH4 and CO2 emissions from tundra ecosystems.