2004
DOI: 10.1038/sj.ijir.3901211
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Implications of PDE4 structure on inhibitor selectivity across PDE families

Abstract: Phosphodiesterases (PDEs) control cellular concentrations of cyclic adenosine monophosphate (cAMP) or cyclic guanosine monophosphate (cGMP). PDE4 and PDE5 selectively hydrolyze cAMP and cGMP, respectively. PDE family members share approximately 25% sequence identity within a conserved catalytic domain of about 300 amino acids. Crystal structure analysis of PDE4's catalytic domain identifies two metal-binding sites: a high-affinity site and a low-affinity site, which probably bind zinc (Zn 2 þ ) and magnesium (… Show more

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Cited by 25 publications
(13 citation statements)
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“…The nuclear staining dye TO-PRO-3 was from Invitrogen (Karlsruhe, Germany); tetramethyl-rhodamine-isothiocyanate (TRITC)-conjugated peanut agglutinin (TRITC-PNA), propidium iodide, the calcium ionophor A23187, percoll, Triton-100, Fura2-AM, laminin, poly-L-ornithine, laminin, aprotinin, DNAse, the phosphodiesterase inhibitor 3-isobutyl-1-methylxanthine (IBMX) [89], rolipram [124], zaprinast [89] as well as the taste stimuli L-glutamate sodium salt (MSG), inosine 5′-monophosphate disodium salt (IMP), saccharin and acesulfam K were purchased from Sigma Aldrich (Deisenhofen, Germany). The sweet-tasting plant protein thaumatin was kindly provided by E. Tareilus (Unilever, Rotterdam, Netherlands).…”
Section: Methodsmentioning
confidence: 99%
“…The nuclear staining dye TO-PRO-3 was from Invitrogen (Karlsruhe, Germany); tetramethyl-rhodamine-isothiocyanate (TRITC)-conjugated peanut agglutinin (TRITC-PNA), propidium iodide, the calcium ionophor A23187, percoll, Triton-100, Fura2-AM, laminin, poly-L-ornithine, laminin, aprotinin, DNAse, the phosphodiesterase inhibitor 3-isobutyl-1-methylxanthine (IBMX) [89], rolipram [124], zaprinast [89] as well as the taste stimuli L-glutamate sodium salt (MSG), inosine 5′-monophosphate disodium salt (IMP), saccharin and acesulfam K were purchased from Sigma Aldrich (Deisenhofen, Germany). The sweet-tasting plant protein thaumatin was kindly provided by E. Tareilus (Unilever, Rotterdam, Netherlands).…”
Section: Methodsmentioning
confidence: 99%
“…This large superfamily of PDEs is subdivided into 11 distinct families based on structure, regulation, and kinetic properties. PDE families also are distinguished functionally by their unique pharmacological inhibitors (157,298,373,556). They share common structural features, having targeting domains and regulatory domains in the NH 2 -terminal region and a conserved catalytic domain consisting of 270 -300 amino acids, usually located toward the COOH-terminal half of the protein.…”
Section: B Phosphodiesterasesmentioning
confidence: 99%
“…There is as yet no crystal structure of any PDE1 holoenzyme either with or without calmodulin in complex, so the orientation of how the calmodulin molecules are bound, how the inhibitory region interacts with the catalytic region, or how the binding of calmodulin activates the enzyme is not known with any precision. However, the crystal structure of the PDE1B catalytic domain has been solved , and in general it is very similar to the other five PDE catalytic domain structures (Card et al, 2004;Ke, 2004). Biochemical data suggest that binding of Ca ϩ2 / CaM relieves an inhibition of activity (Sonnenburg et al, 1995).…”
Section: Overviewmentioning
confidence: 99%