ResultsMyoD-iCre effects robust, muscle-specific inactivation of the Smn F7 allele. To investigate the cell-autonomous effects of depleting SMN in skeletal muscle, we began by testing which of 2 muscle Cre drivers, MyoD-iCre and Myf5-Cre (31, 32), was better suited for our studies. Each drives expression in muscle progenitor cells as early as E8 (33-35), and has been used to selectively deplete or restore disease-related proteins in skeletal muscle (27,36). To determine the tissue specificity of the 2 Cre lines, we separately bred the transgenic mice to animals harboring an inducible Smn deletion allele (Smn F7 ) bearing loxP sites on either side of exon 7 (37, 38). We then used PCR to examine which of the tissues of the double transgenics exhibited evidence of Cre-mediated recombination. As expected, we detected the presence of the deleted (Δ7) allele in the proximal and distal muscles of each of the double transgenic MyoD-iCre Smn F7 and Myf5-Cre Smn F7 animals ( Figure 1A). However, and consonant with other reports (27,39), whereas recombination of the Smn F7 allele was restricted to the skeletal muscle of the MyoD-iCre Smn F7 mice, it was also detected in the CNS tissue of the Myf5-Cre Smn F7 animals; the latter finding precluded the Myf5-Cre line for this study. We nevertheless proceeded to quantify the relative efficiency with which each of the Cre drivers effected Smn F7 inactivation in skeletal muscle. To directly measure how robustly each of the drivers converted the Smn F7 allele to the deleted Smn Δ7 form, we used Q-PCR on genomic DNA from the skeletal muscle of P7 MyoD-iCre Smn F7/+ and Myf5-Cre Smn F7/+ animals, and estimated relative levels of residual Smn F7 allele in each set of mutants. DNA from the muscle tissue of the MyoD-iCre Smn F7/+ mice contained lower levels of the Smn F7 allele than DNA from the muscle of Myf5-Cre Smn F7/+ mice ( Figure 1B), suggesting that MyoD-iCre is more robust in inactivating the floxed allele.As a second, indirect means of determining recombination efficiency, we established crosses to generate MyoD-iCre Smn F7/and Myf5-Cre Smn F7/mutants. In such mutants, the SMN protein