Research conducted at the Plant Breeding and Acclimatization Institute—NIR in Poland in 2020–2022 assessed the commercial quality of potato tubers depending on the production system (organic, conventional), variety, and weather conditions prevailing in the years of research. The tuber size distribution and the share of tuber defects was assessed. It was found that all tested factors influenced the commercial quality of the yield but to different extents. The production system had the greatest influence on most of the examined features, followed by weather conditions and the least influential factor being the variety. The production system had the greatest impact on such features as: tuber size distribution (all fractions), pest damage, scab infection, tuber deformations, and share of green tubers. Weather conditions had the greatest impact on scab infection, pest damage, deformation, cracks and share of large tubers. The variety factor had the greatest influence on such features as: deformations, cracks, green tubers, black scarf, and share of the smallest (non-commercial) tubers. In the conventional system, a significantly better tuber yield distribution was found. The share of tuber defects varied depending on the production system. In the organic system, a greater share of defects such as scab (68.3 and 41.3) and pest damage was found (6.8 and 0.2), while in the conventional system, a greater share of deformations (9.2 and 4.9), cracks (5.4 and 2.4), and rust spots (0.61 and 0.06) occurred.