In this study, restriction fragment length polymorphisms (RFLPs) were identified with an immunoglobulin variable heavy chain region (Ig VH) probe and the inheritance of the polymorphisms was analyzed in families. Linkage within the VHII gene cluster and between the VHII and Ig CH genes was investigated by lod (logarithm of odds) score analysis. In addition, the position of the VHII genes was determined in relation to another polymorphic locus-D14S1, which is tightly linked and centromeric to the CH genes. Genetic associations between genes in the CH and VH clusters were analyzed.These RFLPs represent genetically characterized VH region polymorphisms and it is hoped that they will facilitate the study of disease correlations as well as further the understanding of the genetics of the immunoglobulin heavy chain genes in humans.The immunoglobulins consist of four polypeptide chains, two heavy (H) and two light (L), each of which contains a variable (V) region-encoded amino terminus covalently attached to a constant (C) region-encoded carboxyl terminus. The V region polypeptides can be divided into functional segments categorized as framework regions (FR1-4) and hypervariable or complementarity-determining regions (CDR1-3). Each VH polypeptide is composed of sequences encoded by three different genetic elements. These are (i) V region sequences coding for amino acids 1-98, which form FR1-3 and CDR1 and CDR2; (it) diversity (D) region sequences coding for amino acids 99-103, which form CDR3; and (iil) joining (J) region sequences coding for amino acids 103-110, forming FR4 (1-3). A rearranged VH sequence can be recombined subsequently to the 5' end of any CH subclass region sequence by a process known as class switching (4), which illustrates that a single VH gene can be combined with any of the CH genes (5, 6).Antibody specificity is determined by genetic differences in the V region genes (idiotypes) (6)(7)(8)(9). This idiotypic variation has been studied extensively in mice and rabbits. As early as 1963, antigenic determinants located on V regions of rabbit IgH chains were found (10). Pedigree analysis of rabbits homozygous for two different VH region allotypes demonstrated that VH and CH region allotypes were linked, although recombinants were observed (11).Mendelian studies involving idiotypic determinants of mice have determined that the Ig CH and Ig VH loci are also linked (9, 12-15), although separated by a substantial distance (2). Mouse strains of the same allotype have identical VH gene families; however, in comparisons between inbred strains, each VH gene family is comparable in number but not in the composition of the individual VH genes (16).Utilizing molecular data, it was shown that polytnorphisms in VH coding sequences are directly responsible for two major anti-arsonate idiotypes in A/J mice (17) as well as for different responses to proteins bearing the hapten (4-hydroxy-3-nitrophenyl)acetyl (18). Furthermore, a molecular genetic study of germline variation in six inbred mouse strains demons...