A molecular sensor that allows a gut commensal to control its nutrient foundation in a competitive ecosystem Communicated by Stuart A. Kornfeld, Washington University School of Medicine, St. Louis, MO, June 21, 1999 (received for review April 21, 1999
ABSTRACTLittle is known about how members of the indigenous microflora interact with their mammalian hosts to establish mutually beneficial relationships. We have used a gnotobiotic mouse model to show that Bacteroides thetaiotaomicron, a component of the intestinal microflora of mice and humans, uses a repressor, FucR, as a molecular sensor of L-fucose availability. FucR coordinates expression of an operon encoding enzymes in the L-fucose metabolic pathway with expression of another locus that regulates production of fucosylated glycans in intestinal enterocytes. Genetic and biochemical studies indicate that FucR does this by using fucose as an inducer at one locus and as a corepressor at the other locus. Coordinating this commensal's immediate nutritional requirements with production of a host-derived energy source is consistent with its need to enter and persist within a competitive ecosystem.Humans must adapt to life in a microbial world. As adults, the number of microbes associated with our mucosal surfaces exceeds our total number of somatic and germ cells by more than an order of magnitude (1). The gastrointestinal tract is home to our most complex and populous society of microbes. The composition of the microflora varies along the length of the gut and during the life of the host. The microflora provides a functional barrier to colonization by pathogens (2, 3), plays an important role in normal nutrition and metabolism, and is thought to help shape development of the intestine's mucosal immune system (4). Despite its importance, almost nothing is known about the molecular mechanisms that allow components of the microflora to interact with their hosts so as to establish relationships that are advantageous to both. Understanding such relationships is important in considering the origins of opportunistic infections, various immunopathologic states, and the propagation of antibiotic-resistant organisms (2-8).Assembly of the gut microflora commences at birth. When space and nutrients are not limiting, commensals with high division rates predominate. As the population increases and nutrients are depleted, niches become occupied with more specialized species (4). One conceptualization of how this process may be orchestrated is that the distribution of early-colonizing gut commensals is defined by a preformed nutrient foundation that has been laid down by the host. The ability of other commensals to enter occupied habitats would depend on their ability to utilize these nutrient substrates more efficiently and/or to engineer alterations in the nutrient reservoir to better suit their own metabolic capacities. In a mutualistic relationship, coordination of microbial nutrient utilization and host nutrient production should be achieved at a minimal energetic cost to mi...