Disproportionate activation of pattern recognition receptors plays a role in inflammatory bowel disease (IBD) pathophysiology. Diarrhea is a hallmark symptom of IBD, resulting at least in part from an electrolyte imbalance that may be caused by changes in potassium channel activity. We evaluated the impact of Toll-like receptors (TLRs) and nucleotide-binding oligomerization domain 2 (NOD2) stimulation on potassium conductance of the basolateral membrane in human intestinal epithelial cells (IECs) and the role of potassium channels through electrophysiological assays under short-circuit current in Ussing chambers. TLRs and NOD2 were stimulated using specific agonists, and potassium channels were selectively blocked using triarylmethane-34 (TRAM-34), adenylyl-imidodiphosphate (AMP-PNP) and BaCl2. Potassium conductance of the basolateral membrane decreased upon activation of TLR2, TLR4 and TLR7 in T84 cells (mean ± SEM, -11.2 ± 4.5, -40.4 ± 7.2 and -19.4 ± 5.9 respectively) and in Caco-2 cells (-13.1 ± 5.7, -55.7 ± 7.4 and -29.1 ± 7.2, respectively). In contrast, activation of TLR5 and NOD2 increased basolateral potassium conductance, both in T84 cells (18.0 ± 4.1 and 18.4 ± 2.8, respectively) and in Caco-2 cells (21.2 ± 8.4 and 16.0 ± 3.6, respectively). TRAM-34 and AMP-PNP induced a decrease on basolateral potassium conductance upon TLR4 stimulation in both cell lines. Both KCa3.1- and Kir6- channels appear to be important mediators of this effect in IECs, and could be potential targets for therapeutic agent development.