The application of a closed-loop identi cation procedure to a exible structure, the Jet Propulsion Laboratory Control Structure Interaction Phase B testbed, is described. The approach is based on an indirect, closed-loop identi cation procedure, recently developed by Van den Hof and Schrama (Van den Hof, P. M., and Schrama, R. gives a consistent model estimate in the case where the system noise/output disturbance model is not accurate. The procedure is modi ed and applied, in the frequency domain, to closed-loop data from a exible structure control experiment. The results of the analysis are compared to a purely open-loop frequencydomain identi cation approach. Enhancements to the experimental con guration are also discussed.