“…Importantly, genome studies on mastitis-associated E. coli have been questioned by some investigators, who argue the need to simultaneously analyze the host-pathogen interaction ( Zadoks et al, 2011 ; Leimbach et al, 2017 ). For example, it is important to associate physiological traits with genomic data, including techniques such as dual RNA-Seq of the host and bacteria ( Westermann et al, 2016 , 2017 ), Tn-Seq to test virulence association of genes in vivo ( Opijnen et al, 2009 ; Peek et al, 2020 ), comparative SNP analysis of orthologous genes and intergenic regions ( Rocha et al, 2019 ), proteomics ( Zhang H. et al, 2018 ; Bathla et al, 2020 ), and metabolomics ( Tong et al, 2019 ; Hu et al, 2021 ).…”