We have shown that El and E2 proteins of human papillomavirus type 11 (HPV-11) were essential to support the replication of the homologous viral origin (on) in a transient replication assay, similar to reports on bovine papillomavirus type 1 (BPV-1). Unexpectedly, matched or even mixed combinations of El and E2 proteins from HPV-11 or BPV-l replicated either on in human, monkey, and rodent cell lines of epithelial or fibroblastic lineage, albeit with varied efficiencies. Either set of viral proteins was also able to initiate replication of ori-containing plasmids from many other human and animal papillomaviruses. Thus the interactions among the cis elements and trans factors of papillomaviruses are more conserved than expected from the other members of the papovavirus family, simian virus 40 and polyomavirus, for which large tumor antigen does not replicate a heterologous on in either permissive or nonpermissive cells. We infer that the stringent species and tissue specificities observed for papillomaviruses in vivo are not entirely due to direct restrictions on viral DNA replication. Rather, transcriptional control of viral gene expression must play a dominant role.The initiation of DNA replication occurs at precisely defined origins (ori) to which specific control proteins bind. Simian virus 40 (SV40) and polyomavirus have long been used as models for investigations of mammalian DNA replication. Initiation of SV40 or polyomavirus replication requires the homologous large tumor antigen, is species specific, and occurs only in a permissive cell environment (1-4). However, the uncontrolled replication of these lytic viruses does not reflect the precise regulation of cellular DNA replication, which takes place once per cell cycle in the S phase. In contrast, papillomaviruses have regulated and uncontrolled replication phases during their life cycle and therefore offer a unique opportunity to study eukaryotic DNA replication.Human papillomavirus (HPV) types trophic for mucosal epithelia, including HPV-11, are highly infectious pathogens that cause genital warts and laryngeal papillomatosis. A subset of the genital types, including HPV-16 and -18, is also associated with the development of neoplasia and progression to cancer. In subclinical or benign infections, viral DNA persists as low-copy-number plasmids in the nuclei of the undifferentiated basal stem cells. Productive replication takes place only in the more differentiated upper strata of the epithelium. Although a culture system has recently been developed in which preinfected tissues produce progeny HPV-11 virions (25), propagation of HPVs has not been achieved in vitro starting from virions or transfected DNA. In transfected or infected cells, HPV DNA either integrates into host chromosomes or is lost. Therefore it has not been possible, until now, to perform molecular studies of autonomous HPV DNA replication in cell culture.In contrast, bovine papillomavirus type 1 (BPV-1) in transformed rodent cell lines replicates extrachromosomally at a constan...