Many flowering plants exhibit self-incompatibility (SI) to prevent inbreeding and promote outcrossing. This self/non-self discrimination mechanism is controlled by the S locus, which contains separate genes for pistil and pollen specificities. In the gametophytic SI (GSI) of Rosaceae, Solanaceae and Plantaginaceae, the pistil S determinant, S-RNase, encodes extracellular ribonuclease which is thought to act as a cytotoxin to the self pollen tube, while the pollen S determinant is the F-box gene called SLF/SFB/SFBB. In Petunia (Solanaceae), SLF is reported to be a component of the noncanonical E3 ubiquitin ligase complex with S-RNase binding protein1 (SBP1) and Cullin1 (CUL1), and interact with non-self S-RNases to ubiquitinate them for degradation. Here, we isolated an apple (Malus×domestica) homolog of SBP1 (MdSBP1) from pollen RNA by RT-PCR. MdSBP1 included a RING-HC domain required for E3 ubiquitin ligase activity, and showed 64.0-68.2% amino acid identities with solanaceous SBP1 proteins. Expression analysis showed that MdSBP1 was expressed in all the organs analyzed. We detected an interaction between recombinant MdSBP1 protein and S-RNase of apple using a pull-down assay.Key words: Self-incompatibility, S-RNase binding protein, pollen, apple, Rosaceae.Self-incompatibility (SI) is a mechanism adopted by many flowering plants to prevent inbreeding and promote outcrossing. The S-RNase-based gametophytic self-incompatibility (GSI) of Rosaceae, Solanaceae and Plantaginaceae is controlled by a single multiallelic S locus which contains separate genes for pistil and pollen specificities. When the S haplotype of a pollen matches one of the two S haplotypes of the diploid pistil, the pollen is recognized as self and rejected (de et al. 1986;McClure et al. 1989;Sassa et al. 1996Sassa et al. , 1997Tao et al. 1997;Xue et al. 1996) which is thought to be taken up by pollen tubes and act as a cytotoxin to self pollen (Goldraij et al. 2006;Luu et al. 2000). In Petunia of Solanaceae and species of Rosaceae tribe Pyreae, i.e., apples (Malus×domestica) and pears (Pyrus spp.), multiple F-box genes SLFs/SFBBs are implicated in pollen-part specificity (De Franceschi et al. 2011;Kubo et al. 2010;Kakui et al. 2011;Minamikawa et al. 2010;Saito et al. 2012;Sassa et al. 2007).SLF has been predicted to act as a component of the E3 ubiquitin ligase complex and interact with non-self S-RNases to ubiquitinate them for degradation (Huang et al. 2006;Qiao et al. 2004aQiao et al. , 2004bSijacic et al. 2004). Canonical E3 complex comprises Skp1, Cullin1, F-box protein and Rbx1 (Cardozo and Pagano 2004). In Petunia inflata, however, SLF-containing E3 ubiquitin ligase is reported to be a noncanonical SCF-like complex which includes S-RNase binding protein1 ( Abbreviations: GSI, Gametophytic self-incompatibility; RNase, ribonuclease; SBP1, S-RNase binding protein1; MBP, maltose binding protein.† These authors contributed equally to this work. This article can be found at