Thyroid cancer is the most common endocrine malignancy and its trends of incidence are the highest compared to other tumors. The characterization of the molecular pathways involved in thyroid cancer initiation and progression has made huge progress, underlining the essential role of determined signaling to promote specific features, including dedifferentiation, invasiveness, metastasis and drug resistance. The discovery of many genetic alterations that include point mutations, chromosome translocations, deletions, and copy-number gain has provided new exciting biological insights with translational/clinical applications. Furthermore, mechanisms of drug resistance involve role of pericytes and deregulation of pro-angiogenic molecules such as the tyrosine kinases (TKs) in the microenvironment. BRAF V600E-positive thyroid tumor growth is also influenced by the tumor microenvironment, which is in turn altered by the tumor itself, leading to abnormal extracellular matrix (ECM) deposition and activation of angiogenic pathways. Many of the processes involved in thyroid tumor growth and metastasis are mediated by signaling molecules downstream of BRAF V600E and activated TKs. Overall, understanding how molecular pathways interplay is one of the key-strategies to develop new therapeutic treatments and improve prognosis.