“…The GWAS datasets used in the discovery stage are from published studies (Bentham et al, 2015;Morris et al, 2016;Sun et al, 2016), with European cohorts comprising 4,943 SLE cases and 8,483 controls (EUR), and Asian cohorts including 2,485 cases and 3,947 controls (AS). The samples included in the replication stage in this study partially overlapped with those used in our previous studies (Yang et al, 2009(Yang et al, , 2011(Yang et al, , 2013Wanling et al, 2010;Li et al, 2012;Zhang et al, 2015aZhang et al, ,b,c, 2016Wang et al, 2018), which were collected from Hong Kong (1,255 SLE cases and 951 healthy controls, HK_rep) and Anhui Province, China (1,014 cases and 4,122 controls, AH_rep), respectively. Briefly, SLE cases in the Hong Kong cohort were recruited from five public hospitals in Hong Kong, namely Queen Mary Hospital, Tuen Mun Hospital, Queen Elizabeth Hospital, Princess Margaret Hospital, and Pamela Youde Nethersole Eastern Hospital.…”