A novel bacterium that infects laboratory rats was isolated from wild Rattus norvegicus rats in Japan. Transmission electron microscopy of the spleen tissue revealed small cocci surrounded by an inner membrane and a thin, rippled outer membrane in a membrane-bound inclusion within the cytoplasm of endothelial cells. Phylogenetic analysis of the 16S rRNA gene sequence of the bacterium found in R. norvegicus rats and Ixodes ovatus ticks in Japan revealed that the organism represents a novel clade in the family Anaplasmataceae, which includes the Schotti variant found in Ixodes ricinus ticks in the Netherlands and the Ehrlichia-like Rattus strain found in R. norvegicus rats from China. The novel clade was confirmed by phylogenetic analysis of groESL sequences found in R. norvegicus rats and Ixodes ovatus ticks in Japan. No serological cross-reactivity was detected between this bacterium and members of the genera Anaplasma, Ehrlichia or Neorickettsia in the family Anaplasmataceae. It is proposed that this new cluster of bacteria should be designated 'Candidatus Neoehrlichia mikurensis'.The family Anaplasmataceae currently includes five genera: Ehrlichia, Anaplasma, Neorickettsia, Aegyptianella and Wolbachia (Dumler et al., 2001;Rikihisa et al., 2003). These are all obligately intracellular bacteria that are capable of infecting invertebrates and/or vertebrates. Species of the genera Ehrlichia and Anaplasma include the emerging tick-borne human pathogens, such as Ehrlichia chaffeensis and Anaplasma phagocytophilum. As it is difficult to isolate and culture this group of bacteria, the ultrastructure and sequences of conserved genes, such as 16S rRNA, groEL and gltA (citrate synthase gene), are primarily used to identify and classify this group of bacteria. The present study describes a novel bacterium in the family Anaplasmataceae that was isolated from wild Rattus norvegicus rats by using laboratory rats. The bacteria were found in R. norvegicus rats and Ixodes ovatus ticks in Japan and represent a novel genetic cluster, based on phylogenetic analysis of 16S rRNA gene sequences that included the bacteria found in R. norvegicus rats in China (Pan et al., 2003) and in Ixodes ricinus ticks in the Netherlands (Schouls et al., 1999). Of note, infection of I. ricinus ticks with similar bacteria in Baltic regions of Russia was reported by Alekseev et al. (2001). A similar 16S