Fibroblast growth factors (FGFs) 1 are essential signaling molecules that regulate embryonic growth, development, cell proliferation, differentiation, and angiogenesis (1). At least 19 related members of the FGF family have been identified thus far, and all but four are known to activate one of four high affinity cell surface FGF receptors (FGFR) (2-9).2 The FGFRs consist of an extracellular region containing three immunoglobulin-like (Ig) domains, a stretch of seven conserved acidic amino acids, and a heparin binding domain (10, 11). The FGFRs share an overall 48 -69% amino acid identity (pairwise comparison of the "c" splice form of mouse FGFRs); however, certain sub-regions are nearly 100% conserved. Individual FGFRs are activated by a subset of ligands, and alternative splicing in Ig domain III can dramatically change the specificity for certain .FGFs range in molecular mass from 18 to 29 kDa and show 13-71% amino acid identity (pairwise comparisons of mouse or rat FGFs). Most members of the family share 28 highly conserved amino acid residues, and all FGFs have six identical positions. All members of the FGF family have a high affinity for heparin. Significantly, heparin or heparan sulfate can enhance the high affinity binding of FGFs to their receptors by forming a trimolecular complex with FGF and the FGFR and by decreasing the rate of ligand dissociation (22-28). The formation of this complex results in receptor dimerization, transphosphorylation, and downstream signaling.During development, FGFs are involved in several and sometimes opposing functions requiring tight regulation of their activity and specificity. This may be achieved by regulating spatial and temporal expression of FGFs and FGFRs and by regulating binding specificity (21, 29 -34). A major determinant of ligand binding specificity is alternative splicing in the C terminus of Ig domain III of FGFRs 1-3. This splicing event is tissue-specific and is likely to regulate important signaling events across epithelial/mesenchymal boundaries (35-38). The "b" (epithelial) splice form of FGFR2 (FGFR2b) can be activated by FGF7 and FGF10, ligands produced in mesenchymal tissue. These ligands show no activity toward c (mesenchymal) spliced receptors. Conversely, FGF8 activates c-spliced FGFR2 (FGFR2c) but shows no activity toward FGFR2b (21, 39).2 Notably, FGF8 expression is often restricted to epithelial tissue such as the apical ectodermal ridge of the developing limb bud (40, 41).The C-terminal region of Ig domain III is clearly important for ligand binding and shows specificity toward different ligands. For example, specific mutations in this region in FGFR2 can decrease the binding of FGF2 without affecting the binding of FGF1 or FGF7 (42). The b splice form of FGFR3 (FGFR3b) also has unique properties in that it can only be activated by FGF1, which shows little specificity toward any receptor, and FGF9, which shows no activity toward FGFR1b and FGFR2b (21,43,44). Alternative splicing of Ig domain III can also lead to truncation of the transme...