Identification of a novel sugar 5,7-diacetamido-8-amino-3,5,7,8,9-pentadeoxy-d-glycero-d-galacto-non-2-ulosonic acid present in the lipooligosaccharide of Vibrio parahaemolyticus O3:K6

Mazumder, Koushik; Choudhury, Biswa; Nair, G. Balakrish; Sen, A. K.

doi:10.1007/s10719-007-9080-x

Cited by 3 publications

(2 citation statements)

References 30 publications

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“…The most popular methods are the formation of 2-butyl glycosides by reaction with 2-butanol [169] which has been cited in about 600 papers, and 2-octyl glycosides formed by reaction with 2-octanol [170] cited in about 300 papers, being often complementary of the first. Among the numerous applications which have been published, the following are mentioned as examples: polysaccharide from microrganisms [175][176][177][178], algae [179,180], marine microorganisms [181], medicinal fungus [182], cuttlefish [183], wheat germ [184], edible vegetables [185] and lactic bacteria [186]. A method based in reductive amination [173] was developed for the study of algal galactans and is used by groups working in this field [187][188][189].…”

Section: Formation Of Diastereomersmentioning

confidence: 99%

Derivatization of carbohydrates for GC and GC–MS analyses

Ruiz‐Matute

Hernández‐Hernández

Rodríguez-Sánchez

et al. 2011

Journal of Chromatography B

361

195

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Section: Formation Of Diastereomersmentioning

confidence: 99%

Derivatization of carbohydrates for GC and GC–MS analyses

Ruiz‐Matute

Hernández‐Hernández

Rodríguez-Sánchez

et al. 2011

Journal of Chromatography B

361

195

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“…Endoglycoceramidase was used by Meyer et al (2007) to release glycans from Schistosoma mansoni glycosphingolipids for analysis by MALDI-TOF and to show that they were recognized by the C-type lectin, L-SIGN. A novel (Mazumder, et al, 2008) Xanthomonas Campestris LPS L-, R-TOF (THAP (intact LPS)), DHB carbohydrates, GLC, GC/MS, NMR Acylation and phosphorylation pattern of lipid A shown to strongly influence ability to trigger the innate immune response in Arabidopsis 1 Format (not all items present): MALDI method (matrix), other methods.…”

Section: R-tof (Thap) Gc/msmentioning

confidence: 99%

Analysis of carbohydrates and glycoconjugates by matrix‐assisted laser desorption/ionization mass spectrometry: An update for 2007–2008

Harvey

2011

Mass Spectrometry Reviews

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This review is the fifth update of the original review, published in 1999, on the application of MALDI mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2008. The first section of the review covers fundamental studies, fragmentation of carbohydrate ions, use of derivatives and new software developments for analysis of carbohydrate spectra. Among newer areas of method development are glycan arrays, MALDI imaging and the use of ion mobility spectrometry. The second section of the review discusses applications of MALDI MS to the analysis of different types of carbohydrate. Specific compound classes that are covered include carbohydrate polymers from plants, N- and O-linked glycans from glycoproteins, biopharmaceuticals, glycated proteins, glycolipids, glycosides and various other natural products. There is a short section on the use of MALDI mass spectrometry for the study of enzymes involved in glycan processing and a section on the use of MALDI MS to monitor products of the chemical synthesis of carbohydrates with emphasis on carbohydrate-protein complexes and glycodendrimers. Corresponding analyses by electrospray ionization now appear to outnumber those performed by MALDI and the amount of literature makes a comprehensive review on this technique impractical. However, most of the work relating to sample preparation and glycan synthesis is equally relevant to electrospray and, consequently, those proposing analyses by electrospray should also find material in this review of interest.

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Exploration of the Sialic Acid World

Schauer

Kamerling

2018

Advances in Carbohydrate Chemistry and Biochemistry

250

225

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The Sialic Acid World Table 1 Survey of Reported Structures of Naturally Occurring Members of the Sialic Acid Family-cont'd Name Abbreviation References5-N-Acetyl-8-O-acetyl-9-Olactyl-neuraminic acid Neu5,8Ac 2 9Lt 45 5-N-Acetyl-8-O-methylneuraminic acid Neu5Ac8Me 6,19,25,33,46 5-N-Acetyl-4-O-acetyl-8-Omethyl-neuraminic acid Neu4,5Ac 2 8Me 19 5-N-Acetyl-9-O-acetyl-8-Omethyl-neuraminic acid Neu5,9Ac 2 8Me 6,19,33,46 5-N-Acetyl-9-O-methylneuraminic acid Neu5Ac9Me 47 5-N-Acetyl-4-O-sulfoneuraminic acid Neu5Ac4S 48 5-N-Acetyl-8-O-sulfoneuraminic acid Neu5Ac8S 19,32,49,50 5-N-Acetyl-4-O-acetyl-8-Osulfo-neuraminic acid Neu4,5Ac 2 8S 19 5-N-Acetyl-9-O-phosphoneuraminic acid f,g Neu5Ac9P 51 5-N-Acetyl-2-deoxy-2,3didehydro-neuraminic acid g,h Neu2en5Ac 6,30,33,43,52-54 5-N-Acetyl-9-O-acetyl-2deoxy-2,3-didehydroneuraminic acid g Neu2en5,9Ac 2 55,56 5-N-Acetyl-2-deoxy-2,3didehydro-9-O-lactylneuraminic acid g Neu2en5Ac9Lt 55,565-N-Acetyl-2,7-anhydroneuraminic acid g,i

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Identification of a novel sugar 5,7-diacetamido-8-amino-3,5,7,8,9-pentadeoxy-d-glycero-d-galacto-non-2-ulosonic acid present in the lipooligosaccharide of Vibrio parahaemolyticus O3:K6

Cited by 3 publications

References 30 publications

Derivatization of carbohydrates for GC and GC–MS analyses

Derivatization of carbohydrates for GC and GC–MS analyses

Analysis of carbohydrates and glycoconjugates by matrix‐assisted laser desorption/ionization mass spectrometry: An update for 2007–2008

Exploration of the Sialic Acid World

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