The human herpes simplex virus type 1 regulatory protein ICP4 binds DNA as a dimer and forms a single protein-DNA complex (A complex) with short DNA probes. ICP4 oligomerized in a DNA-dependent manner, forming two or more protein-DNA complexes with longer DNA fragments containing a single DNA binding site. When resolved electrophoretically, one or more low-mobility DNA-protein complexes follow the fast-moving A complex. The major protein-DNA complex (B complex) formed by ICP4 with long DNA probes migrates just behind the A complex in the electric field, implying the oligomerization of ICP4 on the DNA. Binding experiments with circularly permutated DNA probes containing one ICP4 binding site revealed that about 70 bp of nonspecific DNA downstream of the cognate ICP4 binding site was required for efficient B complex formation. In addition, the C-terminal domain of ICP4 was found to be required for DNA-dependent oligomerization and B complex formation. Gel mobility shift analysis of protein-DNA complexes, combined with supershift analysis using different monoclonal antibodies, indicated that the B complex contained two ICP4 dimers. DNase I footprinting of ICP4-DNA complexes showed that one ICP4 dimer contacts the specific binding site and another ICP4 dimer contacts nonspecific DNA in the B complex. DNA-dependent oligomerization increased the affinity of ICP4 for relatively weak binding sites on large DNA molecules. The results of this study suggest how ICP4 may use multiple weak binding sites to aid in transcription activation.Herpes simplex virus type 1 (HSV-1) encodes a 175-kDa nuclear phosphoprotein (11) referred to as infected-cell polypeptide 4 (ICP4) that both positively and negatively regulates RNA polymerase II-dependent transcription of the viral genes. ICP4 negatively regulates the ICP4 promoter (12, 41), latency-associated promoter (3), and L/ST promoter (5, 59) and activates most of the early and late genes of the virus (12,16,22,41,45,57,60). Genetic and biochemical analyses revealed that ICP4 contains discrete domains responsible for DNA binding, nuclear localization, and transcriptional regulation (6,14,43,44,49,51). ICP4 is a dimer in solution (39) and probably functions as a dimer in DNA binding and transcriptional regulation (40,50). A region of the protein close to the DNA binding domain has been shown to be sufficient for ICP4 dimerization (50). ICP4 is a DNA binding protein (21) with preferences for specific DNA sequences (18,19,34). Analysis of different known ICP4 binding sites yielded a relatively degenerate consensus, RTCGTCNNYNYSG, where R is purine, Y is pyrimidine, S is C or G, and N is any base (15).It has been shown that ICP4-mediated repression requires specifically located, appropriately oriented, and relatively strong ICP4 binding sites (24,35,40,46). Biochemical studies showed that purified ICP4, TATA binding protein (TBP), and transcription factor IIB (TFIIB) cooperatively interact on ICP4 and L/ST promoters (47,54) and that the degree of cooperative TBP-DNA-TFIIB-ICP4 complex fo...