2010
DOI: 10.3835/plantgenome2010.06.0013
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Identification and Mapping of Simple Sequence Repeat Markers from Common Bean (Phaseolus vulgarisL.) Bacterial Artificial Chromosome End Sequences for Genome Characterization and Genetic–Physical Map Integration

Abstract: Microsatellite markers or simple sequence repeat (SSR) loci are useful for diversity characterization and genetic-physical mapping. Different in silico microsatellite search methods have been developed for mining bacterial artifi cial chromosome (BAC) end sequences for SSRs. The overall goal of this study was genome characterization based on SSRs in 89,017 BAC end sequences (BESs) from the G19833 common bean (Phaseolus vulgaris L.) library. Another objective was to identify new SSR taking into account three ta… Show more

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Cited by 19 publications
(37 citation statements)
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“…The combination of previously tested markers (499) plus those 346 presented here sums to 845 BES-SSR markers made to date for common bean and tested for polymorphism in the DOR364×G19833 mapping population parents. Polymorphism for the different groups of markers varied ranging from 65% in the study of Córdoba et al [11], to 37.9% in this study to 37.6% in Córdoba et al [12]. Polymorphism also varied with the program (AMMD or Batchprimer3) used to design the markers as in the study by Córdoba et al [12] and whether the sequence was predicted to be gene-derived or non-genic as found in Table 1.…”
Section: Discussionmentioning
confidence: 68%
See 1 more Smart Citation
“…The combination of previously tested markers (499) plus those 346 presented here sums to 845 BES-SSR markers made to date for common bean and tested for polymorphism in the DOR364×G19833 mapping population parents. Polymorphism for the different groups of markers varied ranging from 65% in the study of Córdoba et al [11], to 37.9% in this study to 37.6% in Córdoba et al [12]. Polymorphism also varied with the program (AMMD or Batchprimer3) used to design the markers as in the study by Córdoba et al [12] and whether the sequence was predicted to be gene-derived or non-genic as found in Table 1.…”
Section: Discussionmentioning
confidence: 68%
“…aThe non-BES SSRs include the Pv markers from Yu et al [16], BM from Gaitan et al [19], BMd from Blair et al [17] and BMa from Blair et al [7].bInformation from Córdoba et al [11], [12].cInformation from Fonsêca et al [26].†2 linkage groups with an additional D marker RFLPs in addition to Bng RFLPs.…”
Section: Resultsmentioning
confidence: 99%
“…Sixteen of them showing a relatively high degree of polymorphism were chosen and, with the aim of analyzing two loci per Linkage Group, 6 other SSR primer pairs (monomorphic on the preliminary tested materials) were included in the analyses for a total of 22 SSR markers. Markers from series AG, BM, GATS [18], BMb [20] and BMd [19,21] were included (Table 3). …”
Section: Methodsmentioning
confidence: 99%
“…Since Morgante and Olivieri [16] have demonstrated the feasibility of using microsatellite markers (Simple Sequence Repeat (SSR)) in plants, several studies have been conducted on P. vulgaris and many SSR markers developed [17,18,19,20,21]. Microsatellites are single-locus, multi-allelic, codominant and highly reproducible markers.…”
Section: Introductionmentioning
confidence: 99%
“…A set of 59 Simple Sequence Repeat (SSR) markers (35 genomic and 24 gene-based) covering all 11 linkage groups was initially identified [46][47][48][49][50][51][52] (Table S1). Seven out of the 24 gene-based SSRs were located in genes involved in flowering control in common bean [52].…”
Section: Dna Isolation Markers Selection and Genetic Characterizationmentioning
confidence: 99%