Among photosynthetic bacteria, strains B10 and E1F1 of Rhodobacter capsulatus photoreduce 2,4-dinitrophenol (DNP), which is stoichiometrically converted into 2-amino-4-nitrophenol by a nitroreductase activity. The reduction of DNP is inhibited in vivo by ammonium, which probably acts at the level of the DNP transport system and/or physiological electron transport to the nitroreductase, since this enzyme is not inhibited by ammonium in vitro. Using the complete genome sequence data for strain SB1003 of R. capsulatus, two putative genes coding for possible nitroreductases were isolated from R. capsulatus B10 and disrupted. The phenotypes of these mutant strains revealed that both genes are involved in the reduction of DNP and code for two major nitroreductases, NprA and NprB. Both enzymes use NAD(P)H as the main physiological electron donor. The nitroreductase NprA is under ammonium control, whereas the nitroreductase NprB is not. In addition, the expression of the nprB gene seems to be constitutive, whereas nprA gene expression is inducible by a wide range of nitroaromatic and heterocyclic compounds, including several dinitroaromatics, nitrofuran derivatives, CB1954, 2-aminofluorene, benzo[a]pyrene, salicylic acid, and paraquat. The identification of two putative mar/sox boxes in the possible promoter region of the nprA gene and the induction of nprA gene expression by salicylic acid and 2,4-dinitrophenol suggest a role in the control of the nprA gene for the two-component MarRA regulatory system, which in Escherichia coli controls the response to some antibiotics and environmental contaminants. In addition, upregulation of the nprA gene by paraquat indicates that this gene is probably a member of the SoxRS regulon, which is involved in the response to stress conditions in other bacteria.Nitroaromatics are released into the environment almost exclusively as a consequence of anthropogenic activities related to explosives, paints, dyes, and pharmacology industries (23). Microorganisms have developed many different strategies to remove and degrade these xenobiotic compounds, and oxidative or reductive pathways for the degradation of nitroaromatics have been widely studied (19,23,29). Polynitroaromatic compounds are usually degraded through the following two major reductive pathways: (i) reduction of the aromatic ring by the addition of hydride ions to produce hydride-Meisenheimer complexes and (ii) reduction of the nitro group(s) to a hydroxylamino or amino group(s) by nitroreductases (3, 10, 15, 25). The oxygen-sensitive nitroreductases catalyze one electron step reaction to produce a nitro radical anion that can be reoxidized by oxygen with the concomitant production of superoxide. However, the best-studied nitroreductases are oxygen insensitive since they do not produce radicals and they catalyze the sequential addition of pairs of electrons donated by NAD(P)H to convert the nitro groups into hydroxylamines or amines, often through nitroso derivatives (15, 23). These enzymes are usually homodimers of a 25-kDa pol...