Abstract:In August 2018, a series of large fish kills involving only Silver Carp Hypophthalmichthys molitrix occurred on the Mississippi River in northern Louisiana. Clinical signs observed in moribund animals included erratic swimming behavior, such as spiraling and spinning at the surface. A moribund specimen was captured by dip net near the surface at Lake Providence Landing in East Carroll Parish, northern Louisiana, and was submitted for analysis. An aseptic necropsy was performed, and diagnostic procedures, inclu… Show more
“…equisimilis isolated from animals. The MLSA also supports the existence of fish-specific clades within the subspecies (Porcellato et al 2021;Hawke et al 2021). Further investigation, including incorporation of additional isolates into MLSA and virulence testing, complemented with whole genome phylogenetic analysis will better define these genetic groups and their importance in fish disease.…”
Section: Multilocus Sequence Analysismentioning
confidence: 65%
“…Each housekeeping gene fragment was aligned by MUSCLE with default settings in Geneious Prime 2022.0.2 to corresponding sequences from the fish-associated S. dysgalactiae strain STC3 (Heckman et al 2020; accession numbers MN955921.1, MN955970.1, MN956019.1, MN956068.1, MN956117.1, MN956166.1, MN956215.1, MN956264.1, and MN956313.1) and trimmed to the shared sequence length. A representative trimmed sequence of each housekeeping gene was used in BLAST searches of a localised database populated by the 44 S. dysgalactiae reference strains used previously for S. dysgalactiae MLSA by Hawke et al (2021). The silver carp (Hypophthalmichthys molitrix) strain LADL18-050A was also included in analysis (Hawke et al 2021).…”
Section: Multilocus Sequence Typing Of S Dysgalactiaementioning
confidence: 99%
“…A representative trimmed sequence of each housekeeping gene was used in BLAST searches of a localised database populated by the 44 S. dysgalactiae reference strains used previously for S. dysgalactiae MLSA by Hawke et al (2021). The silver carp (Hypophthalmichthys molitrix) strain LADL18-050A was also included in analysis (Hawke et al 2021). Sequences for each gene were concatenated alphabetically for each strain (arcC-glnA-groEL-gyrB-mutS-pheT-prkC-rpoB-tkt).…”
Section: Multilocus Sequence Typing Of S Dysgalactiaementioning
confidence: 99%
“…However, additional species of streptococci are becoming pathogens of concern in wild and cultured fish populations. While originally believed to be restricted to saltwater fish hosts (Nomoto et al 2006), Group C S. dysgalactiae is an emerging pathogen in both marine (e.g., Japanese yellowtail, Seriola quinqueradiata; amberjack, Seriola dumerili; pompano Trachinotus blochii) and freshwater (e.g., tilapia, O. niloticus; grass carp, Ctenopharyngodon idella; crucian carp, Carassius carassius) species (Costa et al 2013;Hawke et al 2021;Maekawa et al 2020;Netto, Leal, and Figueiredo 2011)). Previous studies on the genetic diversity of geographically distinct alpha hemolytic S. dysgalactiae isolates from tilapia and other fish demonstrate these fish-associated strains form discrete clades, indicating host specificity (Abdelsalam, Eissa, and Chen 2015;Hawke et al 2021).…”
Streptococcal disease and columnaris disease are common in tilapia aquaculture across the globe. Coinfections are also common but often overlooked or not reported. In the present study, we describe the clinical presentation of streptococcosis and columnaris coinfection in diseased Nile tilapia (Oreochromis niloticus), and the phenotypic (Lancefield grouping, hemolytic pattern, biochemical characteristics, antibiotic susceptibility) and genotypic (multilocus sequence analysis for streptococci and multiplex PCR for flavobacteria) characterisation of its etiological agents, namely Group C Streptococcus dysgalactiae subsp. equisimilis and Flavobacterium davisii. We further fulfilled Koch’s postulates with the S. dysgalactiae subsp. equisimilis isolate in genetically improved Nile tilapia.
“…equisimilis isolated from animals. The MLSA also supports the existence of fish-specific clades within the subspecies (Porcellato et al 2021;Hawke et al 2021). Further investigation, including incorporation of additional isolates into MLSA and virulence testing, complemented with whole genome phylogenetic analysis will better define these genetic groups and their importance in fish disease.…”
Section: Multilocus Sequence Analysismentioning
confidence: 65%
“…Each housekeeping gene fragment was aligned by MUSCLE with default settings in Geneious Prime 2022.0.2 to corresponding sequences from the fish-associated S. dysgalactiae strain STC3 (Heckman et al 2020; accession numbers MN955921.1, MN955970.1, MN956019.1, MN956068.1, MN956117.1, MN956166.1, MN956215.1, MN956264.1, and MN956313.1) and trimmed to the shared sequence length. A representative trimmed sequence of each housekeeping gene was used in BLAST searches of a localised database populated by the 44 S. dysgalactiae reference strains used previously for S. dysgalactiae MLSA by Hawke et al (2021). The silver carp (Hypophthalmichthys molitrix) strain LADL18-050A was also included in analysis (Hawke et al 2021).…”
Section: Multilocus Sequence Typing Of S Dysgalactiaementioning
confidence: 99%
“…A representative trimmed sequence of each housekeeping gene was used in BLAST searches of a localised database populated by the 44 S. dysgalactiae reference strains used previously for S. dysgalactiae MLSA by Hawke et al (2021). The silver carp (Hypophthalmichthys molitrix) strain LADL18-050A was also included in analysis (Hawke et al 2021). Sequences for each gene were concatenated alphabetically for each strain (arcC-glnA-groEL-gyrB-mutS-pheT-prkC-rpoB-tkt).…”
Section: Multilocus Sequence Typing Of S Dysgalactiaementioning
confidence: 99%
“…However, additional species of streptococci are becoming pathogens of concern in wild and cultured fish populations. While originally believed to be restricted to saltwater fish hosts (Nomoto et al 2006), Group C S. dysgalactiae is an emerging pathogen in both marine (e.g., Japanese yellowtail, Seriola quinqueradiata; amberjack, Seriola dumerili; pompano Trachinotus blochii) and freshwater (e.g., tilapia, O. niloticus; grass carp, Ctenopharyngodon idella; crucian carp, Carassius carassius) species (Costa et al 2013;Hawke et al 2021;Maekawa et al 2020;Netto, Leal, and Figueiredo 2011)). Previous studies on the genetic diversity of geographically distinct alpha hemolytic S. dysgalactiae isolates from tilapia and other fish demonstrate these fish-associated strains form discrete clades, indicating host specificity (Abdelsalam, Eissa, and Chen 2015;Hawke et al 2021).…”
Streptococcal disease and columnaris disease are common in tilapia aquaculture across the globe. Coinfections are also common but often overlooked or not reported. In the present study, we describe the clinical presentation of streptococcosis and columnaris coinfection in diseased Nile tilapia (Oreochromis niloticus), and the phenotypic (Lancefield grouping, hemolytic pattern, biochemical characteristics, antibiotic susceptibility) and genotypic (multilocus sequence analysis for streptococci and multiplex PCR for flavobacteria) characterisation of its etiological agents, namely Group C Streptococcus dysgalactiae subsp. equisimilis and Flavobacterium davisii. We further fulfilled Koch’s postulates with the S. dysgalactiae subsp. equisimilis isolate in genetically improved Nile tilapia.
“…The subspecies SDSD has been considered strictly an animal pathogen, and it is commonly associated with bovine mastitis ( Rato et al, 2013 ) and infectious arthritis in sheep ( Smistad et al, 2021 ) and septicemia in vampire bats ( Mioni et al, 2018 ). SDSD has been considered an important pathogen in aquaculture systems worldwide ( Maekawa et al, 2020 ; Hawke et al, 2021 ). Phylogenetic studies based on the sodA gene revealed that isolates from human blood cultures are closely related to SDSD from the fish host, suggesting that SDSD represents an important potential causative agent of zoonoses ( Koh et al, 2009 , 2020 ).…”
Streptococcus dysgalactiae (SD) is capable of infecting both humans and animals and causing a wide range of invasive and non-invasive infections. With two subspecies, the taxonomic status of subspecies of SD remains controversial. Subspecies equisimilis (SDSE) is an important human pathogen, while subspecies dysgalactiae (SDSD) has been considered a strictly animal pathogen; however, occasional human infections by this subspecies have been reported in the last few years. Moreover, the differences between the adaptation of SDSD within humans and other animals are still unknown. In this work, we provide a phylogenomic analysis based on the single-copy core genome of 106 isolates from both the subspecies and different infected hosts (animal and human hosts). The accessory genome of this species was also analyzed for screening of genes that could be specifically involved with adaptation to different hosts. Additionally, we searched putatively adaptive traits among prophage regions to infer the importance of transduction in the adaptation of SD to different hosts. Core genome phylogenetic relationships segregate all human SDSE in a single cluster separated from animal SD isolates. The subgroup of bovine SDSD evolved from this later clade and harbors a specialized accessory genome characterized by the presence of specific virulence determinants (e.g., cspZ) and carbohydrate metabolic functions (e.g., fructose operon). Together, our results indicate a host-specific SD and the existence of an SDSD group that causes human–animal cluster infections may be due to opportunistic infections, and that the exact incidence of SDSD human infections may be underestimated due to failures in identification based on the hemolytic patterns. However, more detailed research into the isolation of human SD is needed to assess whether it is a carrier phenomenon or whether the species can be permanently integrated into the human microbiome, making it ready to cause opportunistic infections.
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