Dental disorders are one of the most common developmental defects in humans. During tooth development, cell patterning, morphogenesis, and differentiation are fundamental processes, which are mediated by conserved signaling pathways and transcription factors. Genetic mutations in regulators of these pathways often lead to developmental defects in teeth. For example, individuals with DiGeorge syndrome have dental abnormalities caused by mutations in T-box protein 1 (TBX1), a gene that regulates tooth development. Although more than 300 genes have been associated with tooth development, the underlying mechanisms remains elusive. In this dissertation, I studied the function of Pituitary homeobox 2 (Pitx2) and Iroquois 1 (Irx1) in mice. I showed that Pitx2 controls dental epithelial stem cell (DESC) differentiation and proliferation at early stages of tooth development. Additionally, I found that Irx1 regulates the differentiation of DESCs to outer enamel epithelium (OEE) at the later stage of tooth development. The regulation of Pitx2 is partially through sonic hedgehog (Shh) signaling, which is produced by the dental epithelial signaling center and critical for tooth development. In addition, I show that Pitx2 directly promotes the expression of Irx1, and then regulates the expression of Forkhead box protein J1 (Foxj1) and Sex determining region Y-box9 (Sox9). In this dissertation, I show that the Pitx2-Irx1 regulatory network is essential for tooth development with evidence at the cellular and molecular level. The findings of my study provide the field with a better understanding of the underlying mechanisms of tooth development and regeneration. viii TABLE OF CONTENTS LIST OF FIGURES .