N-Myristoyltransferase (NMT) is an emerging therapeutic target that catalyzes the attachment of myristate to the N terminus of an acceptor protein. We have developed a medium-throughput assay for screening potential small molecule inhibitors of human NMT-1 consisting of recombinant enzyme, biotinylated peptide substrate, and [3 H]myristoyl-CoA. Approximately 16,000 diverse compounds have been evaluated, and significant inhibition of NMT was found with 0.8% of the compounds. From these hits, we have identified the cyclohexyl-octahydropyrrolo[1,2-a]pyrazine (COPP) chemotype as inhibitory toward human NMT-1. Thirty-two compounds containing this substructure inhibited NMT-1, with IC 50 values ranging from 6 M to millimolar concentrations, and a quantitative structure-activity relationship equation (r 2 ϭ 0.72) was derived for the series. The most potent inhibitor (24, containing 9-ethyl-9H-carbazole) demonstrated competitive inhibition for the peptide-binding site of NMT-1 and noncompetitive inhibition for the myristoylCoA site. Computational docking studies using the crystal structure of the highly homologous yeast NMT confirmed that 24 binds with excellent complementarity to the peptide-binding site of the enzyme. To evaluate the ability of 24 to inhibit NMT activity in intact cells, monkey CV-1 cells expressing an Nmyristoylated green fluorescent protein (GFP) fusion protein were treated with a known NMT inhibitor or with 24. Each compound caused the redistribution of GFP from the plasma membrane to the cytosol. Furthermore, 24 inhibits cancer cell proliferation at doses similar to those that inhibit protein myristoylation. Overall, these studies establish an efficient assay for screening for inhibitors of human NMT and identify a novel family of inhibitors that compete at the peptide-binding site and have activity in intact cells.The term protein myristoylation refers to the covalent attachment of myristic acid to specific proteins. This process has been shown to target proteins to specific subcellular membranes (Boutin, 1997), stabilize protein conformation (Chow et al., 1987;Zheng et al., 1993;Resh, 1996), and facilitate additional lipidations (Robbins et al., 1995;Yurchak and Sefton, 1995;Song et al., 1997;van't Hof and Resh, 1999). Although the reaction mainly occurs as a cotranslational event, it has been shown to occur after cleavage of some substrates (Zha et al., 2000). N-Myristoyltransferase (NMT; E.C. 2.3.1.97) catalyzes this addition onto the N-terminal glycine residue of specific proteins. The reaction requires only myristoyl-CoA and a protein containing a suitable peptide sequence and occurs through an ordered Bi Bi mechanism Rocque et al., 1993;Bhatnagar et al., 1998). The list of myristoylated proteins is diverse, including viral proteins, G␣ proteins, tyrosine kinases of the Src family, and nitric oxide synthase. Gene replacement studies indicate that NMT is essential for viability of Cryptococcus neoformans (Lodge et al., 1994). In addition, mutation or deletion of NMT results in recess...