There are very few root genes that have been described in rice as a monocotyledonous model plant so far. Here, the OsRAA1 (Oryza sativa Root Architecture Associated 1) gene has been characterized molecularly. OsRAA1 encodes a 12.0-kD protein that has 58% homology to the AtFPF1 (Flowering Promoting Factor 1) in Arabidopsis, which has not been reported as modulating root development yet. Data of in situ hybridization and OsRAA1::GUS transgenic plant showed that OsRAA1 expressed specifically in the apical meristem, the elongation zone of root tip, steles of the branch zone, and the young lateral root. Constitutive expression of OsRAA1 under the control of maize (Zea mays) ubiquitin promoter resulted in phenotypes of reduced growth of primary root, increased number of adventitious roots and helix primary root, and delayed gravitropic response of roots in seedlings of rice (Oryza sativa), which are similar to the phenotypes of the wild-type plant treated with auxin. With overexpression of OsRAA1, initiation and growth of adventitious root were more sensitive to treatment of auxin than those of the control plants, while their responses to 9-hydroxyfluorene-9-carboxylic acid in both transgenic line and wild type showed similar results. OsRAA1 constitutive expression also caused longer leaves and sterile florets at the last stage of plant development. Analysis of northern blot and GUS activity staining of OsRAA1::GUS transgenic plants demonstrated that the OsRAA1 expression was induced by auxin. At the same time, overexpression of OsRAA1 also caused endogenous indole-3-acetic acid to increase. These data suggested that OsRAA1 as a new gene functions in the development of rice root systems, which are mediated by auxin. A positive feedback regulation mechanism of OsRAA1 to indole-3-acetic acid metabolism may be involved in rice root development in nature.The growth and development of crops depend on their roots to take up water and nutrient material from soil. The root system of rice (Oryza sativa) consists of embryonic and postembryonic roots. The rice embryonic roots, originating from the radical, emerge after germination. They develop into two forms, one primary root and several seminal roots. Postembryonic roots include adventitious roots that are formed from nodes of the plant and lateral roots that develop on all root types.As is known, plant hormone auxin (indole-3-acetic acid [IAA]) plays an important role in controlling root development, such as inhibiting elongation of a primary root and promoting formation of adventitious roots, lateral roots, and root hairs. In Arabidopsis, it has been reported that genes involved in the auxin signal transduction pathway are able to control the development of roots. For example, mutants of the AUX/IAA gene family, such as SHY2/IAA3, SLR1/ IAA14, IAA28, and MSG2/IAA19, show reduced lateral roots or no lateral roots (for review, see Reed, 2001). Overexpression of AUX1, TIR1, or NAC1 can promote lateral root development (Gray et al., 1999;Xie et al., 2000;Marchant et al., 2002). ...