Developmentally programmed deoxyribonucleic acid (DNA) rearrangements are structural reorganisations of the genome that occur reproducibly during the development of a variety of organisms. In the majority of cases, programmed DNA rearrangements function to alter gene expression. V(D)J recombination is a DNA rearrangement that occurs during the development of the human immune system to assemble functional genes encoding antibodies. Some human pathogens use programmed DNA rearrangements to evade the immune system by varying the expression of their antigenic surface proteins. However, in some cases, the function of large‐scale developmentally programmed DNA rearrangements remains unknown. In the ciliate protozoan
Tetrahymena thermophila
, a wide variety of programmed rearrangements occur during the development of the somatic nucleus including chromosome fragmentation and deletion of specific DNA sequences. In a related ciliate
Oxytricha trifallax
, programmed genome rearrangements are needed to unscramble segments to assemble functional genes.
Key Concepts
Programmed DNA rearrangements utilise diverse recombination mechanisms.
Human pathogens use programmed DNA rearrangements to vary expression of antigenic surface proteins to avoid the host immune system.
V(D)J recombination in human development assembles functional genes encoding antibodies.
Chromatin diminution in parasitic nematodes silences germ‐line‐specific gene expression in somatic cells.
The ciliate protozoa undergo large‐scale programmed DNA rearrangements during nuclear development.
The mechanism of programmed DNA deletion in the ciliate
Tetrahymena thermophila
involves small noncoding RNAs that direct formation of a specific chromatin structure.
The ciliate
Oxytricha trifallax
unscrambles gene segments during the development of its somatic nucleus.