“…Such limitations have hampered efforts to identify proteins involved in cell shape, spatial localization of proteins, and transport across the periplasmic space while accommodating flagellar rotation. To address some of the molecular mechanisms underpinning these and other cellular processes, fluorescent proteins and dyes have proven to be valuable tools, permitting detection of spirochete-host interactions (Moriarty et al, 2008; Norman et al, 2008; Dunham-Ems et al, 2009; Bockenstedt et al, 2012; Carrasco et al, 2015; Teixeira et al, 2016; Krishnavajhala et al, 2017), localization or transport of proteins within the bacterial cell (Schulze and Zuckert, 2006; Schulze et al, 2010; Xu et al, 2011; Zhang et al, 2015), or as reporter systems for gene expression (Carroll et al, 2003; Bykowski et al, 2006; Clifton et al, 2006; Eggers et al, 2006; Miller et al, 2006; Gautam et al, 2008, 2009; Whetstine et al, 2009; Aviat et al, 2010; Cerqueira et al, 2011; Grove et al, 2017; Matsunaga and Haake, 2018; Takacs et al, 2018). However, the use of fluorescent protein fusions, most commonly with green or red fluorescent protein (GFP or RFP, respectively), has limitations: the bulkiness of these proteins, typically 25–30 kDa, can lead to atypical protein localization and irregular cellular trafficking (Senf et al, 2008), and some FP alleles have specific pH or oxygen requirements that are not always compatible with the targeted location or underlying biological question.…”