The P-cluster of nitrogenase is one of the most complex biological metallocenters known to date. Despite the recent advances in the chemical synthesis of P-cluster topologs, the biosynthetic mechanism of P-cluster has not been well defined. Here, we present a combined biochemical, electron paramagnetic resonance, and Xray absorption spectroscopy/extended X-ray absorption fine-structure investigation of the maturation process of P-clusters in ⌬nifH molybdenum-iron (MoFe) protein. Our data indicate that the previously identified, [Fe 4S4]-like cluster pairs in ⌬nifH MoFe protein are indeed the precursors to P-clusters, which can be reductively coupled into the mature [Fe8S7] structures in the presence of Fe protein, MgATP, and dithionite. Moreover, our observation of a biphasic maturation pattern of P-clusters in ⌬nifH MoFe protein provides dynamic proof for the previously hypothesized, stepwise assembly mechanism of the two P-clusters in the ␣22-tetrameric MoFe protein, i.e., one P-cluster is formed in one ␣ dimer before the other in the second ␣ dimer.assembly ͉ biosynthesis B iological nitrogen fixation is a remarkable chemical feat accomplished by a select group of microorganisms. These microorganisms have a complex metalloenzyme, nitrogenase, which is capable of reducing atmospheric dinitrogen (N 2 ) to bioavailable ammonia (NH 3 ) under ambient conditions. The most extensively studied member of this enzyme family is the molybdenum (Mo)-nitrogenase of Azotobacter vinelandii, which consists of two redox-active proteins (1). One, designated iron (Fe) protein (encoded by nifH), is a 60-kDa ␣ 2 homodimer containing one [Fe 4 S 4 ] cluster at the subunit interface and one MgATP binding site in each subunit. The other, termed molybdenum-iron (MoFe) protein (encoded by nifD and nifK), is a 230-kDa ␣ 2  2 heterotetramer containing one P-cluster ([Fe 8 S 7 ]) at each ␣/-subunit interface and one iron-molybdenum cofactor (FeMoco) ([MoFe 7 S 9 X-homocitrate], where X ϭ C, N, or O) within each ␣ subunit (2). It is believed that, concomitant with ATP hydrolysis, Fe protein undergoes repeated association/ dissociation processes with MoFe protein, donating electrons from its [Fe 4 S 4 ] cluster, through the P-cluster, to the FeMoco of the MoFe protein, where substrate reduction eventually takes place.The structure of P-cluster can be viewed as a symmetric double cubane in which two [Fe 4 S 4 ] cubanes share a central 6 -sulfur (S) atom. Such a geometry suggests that the P-cluster is likely assembled by the fusion of two [Fe 4 S 4 ]-like subclusters (3). This reaction mechanism is well established in synthetic inorganic chemistry and successfully realized by the recent synthesis of P-cluster topologs (4-6). Biological evidence in this regard was supplied by a FeMoco-deficient form of MoFe protein (designated ⌬nifH MoFe protein), which was isolated from a nifHdeletion strain of A. vinelandii (7). Extended X-ray absorption fine structure (EXAFS) (8) and magnetic circular dichroism (MCD) (9) ]-like clusters are likely th...